Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01674 ATGTTGGCCATATCCTCTCCTTTGTTCTCAACAATTGGATGGCCCTTTGAAGATCCCATAAGCCATAATCAGCATCAGAATCACTTCTACAAAGACATTACTACTGATCAATTTTTTgatattaataatcaaattgagGCTGAAAATTCAACTGATCCATCACAAGCCACAAGCTGTGACCTAAGTATGGTCAAGAAGCTTGTTCATAATGCTAGTGAGCGTGATCGCCGCAAGaagatcaataatttatattccTCGATTCGTTCTCTTCTTCCTGTTTCAGATCAAATGAAGAAGTTGAGCATTCCAGCAACAATTTCGCGAGTCCTAAAATACATACCGGAGTTACAGAAACAGGTGGAAGGACTAAttaagagaaaagaagagatcTTATTGAGATTTTCGCCGCAAGTAGACGAGGTTTTGATAAGCAAAGAATCTCAAAGGAAGAAGCAAAGTTACAATTCTGGTTTTGTAGTTTCAACAAGTAGACTTAATGATAGTGAAATTACTATTCAGATTTCATGTTACACTGTTCACAAGATTCCTTTATCTGAGATATTGCTCTGTTTAGAAAATGATGGCCTTTTGCTGCTGAATGTTTCTTCTTCTCAGACATTTGGAGGGAGGGACTTCTATAATTTGCATTTACAGgAGATGGATAAATCTCAGAGATTAGAATCCGATATTCTAAATGAGAAGATCTTATCAATAATGGAGAAAAAGTGA 729 0.3416 MLAISSPLFSTIGWPFEDPISHNQHQNHFYKDITTDQFFDINNQIEAENSTDPSQATSCDLSMVKKLVHNASERDRRKKINNLYSSIRSLLPVSDQMKKLSIPATISRVLKYIPELQKQVEGLIKRKEEILLRFSPQVDEVLISKESQRKKQSYNSGFVVSTSRLNDSEITIQISCYTVHKIPLSEILLCLENDGLLLLNVSSSQTFGGRDFYNLHLQEMDKSQRLESDILNEKILSIMEKK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01674 242 Gene3D - 60 153 IPR036638 GO:0046983
Tsu01g01674 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 133 IPR036638 GO:0046983
Tsu01g01674 242 SMART finulus 70 122 IPR011598 GO:0046983
Tsu01g01674 242 Pfam Helix-loop-helix DNA-binding domain 65 117 IPR011598 GO:0046983
Tsu01g01674 242 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 240 - -
Tsu01g01674 242 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 240 IPR015660 GO:0003700|GO:0006357
Tsu01g01674 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Tsu01g01674 242 CDD bHLH_AtORG2_like 65 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01674 Tsu-Chr1 16464393 16466562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01674 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.353 4.25e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g01674 HLH 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01674 - - mtr:MTR_1g048750 336.65