Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01671 ATGATGGTGAATGAAACAAAGACATGTGATTCGATGAAGTACGAGGATGTTGGAGAAAGGATTGTCATGTTGTTTGGTGTGAATATTGCAAAAAAACCCACCAAATTTGATGACATCAAGTCTATCCATGCTGACAATAAGAATGAGATTTCTATTTTTGATACTGGTGAAAGTTCCAACAACCATGATAAGATGAAAAAGGAATTGGAACAAAGGAGTGAGAACGAGAAGGAGATCAAGGAGAATGACAATGATAATAACAATCTTCCAGAGTTAGTTATTGGCCAAGCTCCCAACCATGAAAGGATCAGAAGGGTGAAATCATGGACAGAGATGGAGCACAAGGCTTTCTTGAAAGGTTTAAAGGCTGTTGGAAAAGGAAGATGGAAGAATATATCAAGAAACTTTGTGATCACCAAGACTCCTACTCAAGTTGCTAGTCATGCACAAAAGTATTTTCAAAGAAGGGAACCAATAGTCCATAAAACCAAGCGCCAAAGCATCTTTGACATGAAACTTCTTGATGTgaatatcaaaattcaaaagctTCTGCTGCTTAGGTCTAATGTCTCAGATGTCTGGTTCAAATTTAGATAG 597 0.3652 MMVNETKTCDSMKYEDVGERIVMLFGVNIAKKPTKFDDIKSIHADNKNEISIFDTGESSNNHDKMKKELEQRSENEKEIKENDNDNNNLPELVIGQAPNHERIRRVKSWTEMEHKAFLKGLKAVGKGRWKNISRNFVITKTPTQVASHAQKYFQRREPIVHKTKRQSIFDMKLLDVNIKIQKLLLLRSNVSDVWFKFR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01671 198 Gene3D - 107 159 - -
Tsu01g01671 198 PANTHER TRANSCRIPTION FACTOR KUA1 6 173 - -
Tsu01g01671 198 CDD SANT 108 153 IPR001005 -
Tsu01g01671 198 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 108 155 IPR006447 GO:0003677
Tsu01g01671 198 SMART sant 105 155 IPR001005 -
Tsu01g01671 198 MobiDBLite consensus disorder prediction 59 85 - -
Tsu01g01671 198 Coils Coil 62 86 - -
Tsu01g01671 198 Pfam Myb-like DNA-binding domain 107 153 IPR001005 -
Tsu01g01671 198 PANTHER TRANSCRIPTION FACTOR KUA1 6 173 - -
Tsu01g01671 198 SUPERFAMILY Homeodomain-like 107 157 IPR009057 -
Tsu01g01671 198 MobiDBLite consensus disorder prediction 52 92 - -
Tsu01g01671 198 ProSiteProfiles Myb-like domain profile. 108 153 IPR001005 -
Tsu01g01671 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 100 157 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01671 Tsu-Chr1 16436981 16439524 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu01g01671 Myb_DNA-binding 3.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01671 - - ccav:112514057 104.375