Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01661 ATGACAACAGCAAAAGAAACTTCAAATTTAGATCTCATACGCCATCATCTCTTAGGTGATAACATTTCTGTTAAACTTGAAAACCCTTCACCAGAATTtgatttatattcatatatttcagaaaacacaaattttttcACTTTCCTTGAAGGTTATGATTTAGTAGCAGATATGGAATTTTTTGGTAACACTTCTCAAAGTGAAACAAAACCTTCAAAGGAAATAAAGAAATCAAACTCACCCGAACCGAAACCGAAACCGAAACCGGAACCGATTAGTACTATTGTGTCTTCAAAGAAGATTaagaaagaagaagagtttGTTGATGAAACAAGAAGATATAGAGGTGTAAGGAGAAGACCATGGGGGAAATTTGCAGCTGAGATACGTGATCCATCAAGGAAAGGAAGTAGAGTTTGGTTAGGTACATTTGATTGTGAAATTGATGCTGCAAAAGCTTATGATTCTGCTGCTTTCAGAATGAGAGGTCAAAAAGCTATATTGAATTTTCCTTTGGAAGCTGGTGTTTGTGATCCTAAGCCTAATAGTTGTGGAAGAAAAAGGAGAAGAGAAAGTGATCAAGTTGAAGCTTCAAGAAGTTCAACTTCAAGTTCATGA 618 0.3317 MTTAKETSNLDLIRHHLLGDNISVKLENPSPEFDLYSYISENTNFFTFLEGYDLVADMEFFGNTSQSETKPSKEIKKSNSPEPKPKPKPEPISTIVSSKKIKKEEEFVDETRRYRGVRRRPWGKFAAEIRDPSRKGSRVWLGTFDCEIDAAKAYDSAAFRMRGQKAILNFPLEAGVCDPKPNSCGRKRRRESDQVEASRSSTSSS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01661 205 CDD AP2 121 171 IPR001471 GO:0003700|GO:0006355
Tsu01g01661 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 5 197 - -
Tsu01g01661 205 Gene3D AP2/ERF domain 112 173 IPR036955 GO:0003700|GO:0006355
Tsu01g01661 205 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 5 197 - -
Tsu01g01661 205 SUPERFAMILY DNA-binding domain 113 173 IPR016177 GO:0003677
Tsu01g01661 205 MobiDBLite consensus disorder prediction 64 92 - -
Tsu01g01661 205 MobiDBLite consensus disorder prediction 182 196 - -
Tsu01g01661 205 Pfam AP2 domain 113 163 IPR001471 GO:0003700|GO:0006355
Tsu01g01661 205 MobiDBLite consensus disorder prediction 179 205 - -
Tsu01g01661 205 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
Tsu01g01661 205 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Tsu01g01661 205 PRINTS Ethylene responsive element binding protein signature 153 173 IPR001471 GO:0003700|GO:0006355
Tsu01g01661 205 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Tsu01g01661 205 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01661 Tsu-Chr1 16317858 16318949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01661 94 200 AP2-EREBP Transcription Factor Family AT5G07580 58.716 5.94e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g01661 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01661 - - ccaj:109813158 239.195