Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01652 ATGGCAGAATCACTCCTCTTCAGTGTTGCGGATTCATTCATAGGCAAACTTGCTTCTCGAGTACTTGATGAAGCTTCCTTGGCACTAGGCGTCTATGACGATTTACGAGGGATTAAAGACACTTCGTCGCTTATCCAAGCCGTGTTGTTGGATGCTGAACAAAAGCAGTGGCAGAACAATGAGTTGCGTGAATGGTTGAGACAGATTAAGTGTGTTTTCTCTGATGCCGAAGATGTCATCGATGATTTCGAGTGTGAGGCGTTGAAGTTGCAAGTTGTCAACACCTCTGGTAGCATTAGAAGGAAGGTACGTCATTATTTCTCAAGTTCTAATCCTCTTGCTTATCGCGTCAAAATTGCACATCAAATCAAAGATATCAATGCAAGATTAACTAAGGTTGCTGCTGATAGGCATAATTTTGGCCTTCAAACAAATTATAGTGATATTTGTGTCGTGCAAAAGCGCGGATTGACTCATTCTCATATAAATGAATCAGATGTCATAGGAAGAGAACatgataaacaaaaaatcataaacctCTTATTGCAAGATGGTGATGATACGTATCTATCTGTTATTCCTATTGTGGGAATGGGGGGTATGGGAAAGACTACCCTTGCAAAGTCGGTGTTCAACGATGAACGTTTAGGCGAGGCTTTTCAAAAAAAGATGTGGGTATGTGTGTCTCATGATTTTGAACTTAAGCATTTGCTTGTTAAAATCCTCAATTCTACAAGTGATTCTTCTCCTAACACATTTCAACAAGAAAACTATCAAAACTTTGATATAGAGCAATTACAAAATCACTTAAGAAACACACTTTCCGATCAAAAGTTCTTGCTCGTCCTGGACGATGTATGGAACGAGAGTCGGGTTAAATGGGAAGAATTGAAGGATTTAATTCAATGTGCTAATGGAAGTAAAGTACTAGTGACTACACGTAGCCACACAACAGCTGATGTGATGTGCACCACCAACACATCTCATATTTTGCAAGGTCTTTCTCAAAATGATTCCTTGTCTGTATTTGTTAAATGGGCTTTCAAAGAAGGAGAAGATAAAAAACATCCAGAATTGATGGAGGTAGGAAAAACTATTGTGCAAAAATGCGGAGGCCTTCCTTTGGCCATAAGAACATTGGGGAGTTCCCTATTCTTAAAATTTAATCTAGAAGAGTGGAAATTTGTGAAAGATAATGAGATTTGGAATTTACCACAACAAGATGATGGTATTTTGCCGGCTATAAAATTGTGTTATGATCAATTACCATCTTACCTAAAACGATGTTTTGCATGTTTCTCCCTATTTGAAAAGAGTACTCCTCTTTTTGATATTGAGGTTACTGCATTTTGGGACGCACTGGGTTTTCTTCCAACACCAAAACAAGGTGAAAATTCTGGAGATATTGGAAAGCAACTCTTGCATGAGCTAtgctcaaggtcttttgttcaAAATTTTGCAGATGGCGGTGGTATTTTCTGTTTTGAATTGCACGATTTGGTGCATGATCTTGCATTATATGTTGCAAGAGATGATTTTCAATTGTTGAACATTCGATGTGAAAATATAAGAGAGAATGTCCGCCATTTGTCAGTTCTTGAAAATGATTTGCTTGGCCAAATTTCAATTCCCACTGGGTTGAGAACCATACTTTTTCCCGATGGAGCAAACAATGAACCTTTCTTGAATACTTGTCTATCAAGGTGCAAATACTTACGACTTTTGAAAATGAATAATTCAAGATACAAATATTTACCCAACTCCATTGGTAAGTTGAAACATTTACGATGTCTCAATCTTCAACAAAATAAGCAACTGGAGAGGCTTCCTGATTCTGTGTGCAAACTCCAAAATTTGCAAGCCTTAAATCTCATTGGATGTGAAAAACTACAAAAATTGCCCAATGGAATAGGAAATTTGATCAAACTTCAAGAACTATGTATAACCACAAAGCAATCTAACTTTCCAGAAGGGTTAGCCAAATTGTCTTCTCTAGAAATTCTAGTATTCCGTCATTGTGATAGTTTGATGTTTTCTTTTGAAGGAATACAATTTCCTAAACTTAAACTGTTAAGTTTTTCATCTTGTGGGAATCTGAAGTCATTGCCATTTCATATCATTCGAAATATAGAGAGTTTGGTCATTCATAATTGTAATACGGTGATATTATCAATGGGTGATAACAACAACGAAATACCCAACTTAAAGTTAAAGTTACTAAGTCTTGAAATTTTGCCTCAAATAGTTACTTTTCCGCAATGGCTTCAAGGATGTGCAAACACCCTACATACCTTATATATTGAAAACTGTGAAAATCTTGAGGAGCTTCCTAAGTGGTTGTCAAGTTTTATTTCTCTCAAGAACCTTGGAATTGAAAACTGTTCAAAATTGGTTTCACTACCTGAAGATGTGCATCACCTTCCAAACCTTGAGCGTTTAGATATCATTGGTTGTCCTGAGTTATATAGAAGATACCAGCCTGAAGTTGGACAAGATTGGTACAAGATATCACATATCAAACATGTTACCTTTGAATTACAAGAATCTGAAGATTAA 2556 0.3611 MAESLLFSVADSFIGKLASRVLDEASLALGVYDDLRGIKDTSSLIQAVLLDAEQKQWQNNELREWLRQIKCVFSDAEDVIDDFECEALKLQVVNTSGSIRRKVRHYFSSSNPLAYRVKIAHQIKDINARLTKVAADRHNFGLQTNYSDICVVQKRGLTHSHINESDVIGREHDKQKIINLLLQDGDDTYLSVIPIVGMGGMGKTTLAKSVFNDERLGEAFQKKMWVCVSHDFELKHLLVKILNSTSDSSPNTFQQENYQNFDIEQLQNHLRNTLSDQKFLLVLDDVWNESRVKWEELKDLIQCANGSKVLVTTRSHTTADVMCTTNTSHILQGLSQNDSLSVFVKWAFKEGEDKKHPELMEVGKTIVQKCGGLPLAIRTLGSSLFLKFNLEEWKFVKDNEIWNLPQQDDGILPAIKLCYDQLPSYLKRCFACFSLFEKSTPLFDIEVTAFWDALGFLPTPKQGENSGDIGKQLLHELCSRSFVQNFADGGGIFCFELHDLVHDLALYVARDDFQLLNIRCENIRENVRHLSVLENDLLGQISIPTGLRTILFPDGANNEPFLNTCLSRCKYLRLLKMNNSRYKYLPNSIGKLKHLRCLNLQQNKQLERLPDSVCKLQNLQALNLIGCEKLQKLPNGIGNLIKLQELCITTKQSNFPEGLAKLSSLEILVFRHCDSLMFSFEGIQFPKLKLLSFSSCGNLKSLPFHIIRNIESLVIHNCNTVILSMGDNNNEIPNLKLKLLSLEILPQIVTFPQWLQGCANTLHTLYIENCENLEELPKWLSSFISLKNLGIENCSKLVSLPEDVHHLPNLERLDIIGCPELYRRYQPEVGQDWYKISHIKHVTFELQESED 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01652 851 Pfam Rx N-terminal domain 11 97 IPR041118 -
Tsu01g01652 851 Gene3D - 10 124 - -
Tsu01g01652 851 CDD RX-CC_like 8 134 IPR038005 -
Tsu01g01652 851 Gene3D Ribonuclease Inhibitor 682 828 IPR032675 -
Tsu01g01652 851 Gene3D Ribonuclease Inhibitor 513 681 IPR032675 -
Tsu01g01652 851 Gene3D - 418 507 IPR036388 -
Tsu01g01652 851 PANTHER OS08G0543100 PROTEIN 33 824 - -
Tsu01g01652 851 PRINTS Disease resistance protein signature 192 207 - -
Tsu01g01652 851 PRINTS Disease resistance protein signature 273 287 - -
Tsu01g01652 851 PRINTS Disease resistance protein signature 370 384 - -
Tsu01g01652 851 PRINTS Disease resistance protein signature 805 821 - -
Tsu01g01652 851 Pfam NB-ARC domain 170 420 IPR002182 GO:0043531
Tsu01g01652 851 Gene3D - 151 328 IPR027417 -
Tsu01g01652 851 Gene3D - 333 417 IPR042197 -
Tsu01g01652 851 PANTHER DISEASE RESISTANCE PROTEIN RP 33 824 IPR044974 GO:0006952
Tsu01g01652 851 SUPERFAMILY L domain-like 497 822 - -
Tsu01g01652 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 432 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01652 Tsu-Chr1 16210202 16212757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01652 193 821 WRKY Transcription Factor Family AT5G45050 23.885 8.34e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01652 - - mtr:MTR_7g078640 1033.48