Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01650 ATGGCAGAATCACTCCTCTTCAGTGTTGCTGAGTCATTCATAGGCAAACTTACTTCTCGAGTTCTTGATGAAGCTTCCTTGGCACTAGGCGTCTATGACGATTTACAACGGATCAAAGACACTTCGTCACTTATCCAAGCTGTGTTGTTGGATGCTGAACAAAAGCAGTGGCAGAACAATGAGTTGCGTGAATGGTTGAGACAAATTAAGCATGTCTTCTCTGATGCCGAAGATGTCATCGATGATTTCGAGTGCGAGGCATTGAAGCTGCAAGTTGTCAACACCTCTGGTAGCATTAGAAGGAAGGTACGTCATTACCTCTCAAGTTCTAATCCTCTTGCTTATGGCATCAAAATGGCACATCAAATCAAAGATATCAATGCGAGATTAACTAAGGTTGCTGCTGATAGGCATAATTTTGGCCTTCAAACCAATTATAGTGATACTCGTGTTGTGCAAAAGCGCGAATTGACTCATTCTCATATAAATGATTCAGATGTCATAGGAAGAGAACAcgataaacaaaaaatcatagaCCTCTTATTGCAAGACGGTGATGATACATGTCTAACTGTTATTCCTATTGTGGGAATGGGGGGTATGGGAAAGACTACACTTGCAAAGTCGGTGTTCAATGATGAACATTTAGGCGAGGCTTTTCAAAAAAAGATGTGGGTATGTGTCTCTCATGATTTTGAACTTAAGCATTTGCTTGTTAAAATCCTCAATTCTACAAGTGATTCTTCTCCTAACACATTTCAACAAGAAAACTATCAAAACTTTGATATAGAGCAATTACAAAATCACTTAAGAAACACACTTGCCGATCAAAAGTTCTTGCTCGTCCTAGATNAAGAATTGAAGGATTTAATTCAAGTATGTGCTAAAGGAAGTAAAGTACTAGTGACTACACGTAGCCACACAATAGCTGATATGATGAGCACAAACACATATCACATTTTAGAAGGTCTTTCCCAGAATGATTCCTTGTCTGTATTTATTAAATGGGCTTTCAAAGAAGGAGAAGATAAAAAACATCCAGAATTGATGGAGGTAGGAAAAACTATTGTGCAAAAATGTGGAGGCCTTCCTTTGGCAATAAGAACATTGGGGAGTTCCCTATTCCAAAAATCTAATATAAAAGAGTGGAATTTTATCAAAGATAGTGAGATTTGGAATTTACCGGTGGAAGATGATGGCATTTTGCCGGCTATCAAATTGAGTTACGATCAATTACCTTCTTACTTAAATCGATGTTTTGCTTGTTTCTCCCTATTTCAAAAGGGCATTCAGTTTTCAAATTTGCATTTTATTGGAATTTGGAACGCATTGGGCTTTCTTCCAACACCAAAACAAGGTGAAAATTTGGGAGATATTGGAAAGCAACTCTTGCATGAGCTATGGTCAAGgtcttttcttcaaaattttcaagattttggTGGTGGTTGCAGTTTTGAATTGCACGATTTGGTGCATGATCTTGCGTTATATGTTTCAAAAGATGATTTTCAACTGGTGAACTTTCAAAGtgaaaaaataagagagaatgTCCGTCATTTGTCAATTCGTGAAAATGATTTGCTTGGCCAAATTCTACTTCCCCCTGGATTGAGAACCATACTTTTTCCTAAAGGAGCAAACAATAAACCTTTCTTGAGTACTTGTCTATCAAGGTGCAAATACTTGCGACTTTTGCAAATAAGTGACTCTGGATACAAAAATTTGCCCCGCTCCATTGGTAAGTTGAAACATTTACGATGTCTCCTTCTTCAAACAAACCAGCAATTGGAGAGCCTTCCTGATTCTGTGTGCAAACTCCCAAATTTGCAAGCTTTAAGTCTCTATGGATGTTTAATGCTACAAAAATTGCCCAATGGAATAGGAAATTTGATCAATCTAAAAGAACTATATATAACCACAAAGCAGTCTAACTTCCCGGAAGAGTTAGCCAAATTGTCTTCTCTAGAAATTCTAGCATTCAGTCATTGTGATaatttgatgtttaattttGAAGGAATACAATTTCCTAAACTTCAATCGTTAACTTTTATATCTTGTGGGAATCTAAAATCAATCCCATCTCATATCATTGCAAATATAGAGTGTTTATTCCTTATCAATTGTAATATGGTGATATTGTCAATGGGtgataacaacaacaaaatacgCAACTTAAAGTTAAAGATTCTATTTCTTCAGTCTTTGCCTCAAATAGTTACTTTTCCGCAAGTGCTTCAAGGATGTGCAAACACCCTACATACCTTAGTTATTGAAAACTGTGAAAATCTTGAGGAGCTTCCTAACTGGTTGTCAACTTTTATATCTCTCAAGAACCTTGGAATTGTTAACTGTCCAAAATTGATTTCACTCCCTGAAGATGTGCATCACCTTCCAAACCTTGAAGGTTTAGAAATGATTGGTTGTCCTGAGTTATATAGAAGATACCAGCCAGAAATTGGACAAGATTGGTACAAGATAGAAAATATCAAAGGTGTTATGGTTGAAttacaagaagaagaagaagaagaagaagaagaagatgatgatgatgatgatgatgatgaagaagaagaagaagaagaagttccTAGATAG 2595 0.3437 MAESLLFSVAESFIGKLTSRVLDEASLALGVYDDLQRIKDTSSLIQAVLLDAEQKQWQNNELREWLRQIKHVFSDAEDVIDDFECEALKLQVVNTSGSIRRKVRHYLSSSNPLAYGIKMAHQIKDINARLTKVAADRHNFGLQTNYSDTRVVQKRELTHSHINDSDVIGREHDKQKIIDLLLQDGDDTCLTVIPIVGMGGMGKTTLAKSVFNDEHLGEAFQKKMWVCVSHDFELKHLLVKILNSTSDSSPNTFQQENYQNFDIEQLQNHLRNTLADQKFLLVLDXELKDLIQVCAKGSKVLVTTRSHTIADMMSTNTYHILEGLSQNDSLSVFIKWAFKEGEDKKHPELMEVGKTIVQKCGGLPLAIRTLGSSLFQKSNIKEWNFIKDSEIWNLPVEDDGILPAIKLSYDQLPSYLNRCFACFSLFQKGIQFSNLHFIGIWNALGFLPTPKQGENLGDIGKQLLHELWSRSFLQNFQDFGGGCSFELHDLVHDLALYVSKDDFQLVNFQSEKIRENVRHLSIRENDLLGQILLPPGLRTILFPKGANNKPFLSTCLSRCKYLRLLQISDSGYKNLPRSIGKLKHLRCLLLQTNQQLESLPDSVCKLPNLQALSLYGCLMLQKLPNGIGNLINLKELYITTKQSNFPEELAKLSSLEILAFSHCDNLMFNFEGIQFPKLQSLTFISCGNLKSIPSHIIANIECLFLINCNMVILSMGDNNNKIRNLKLKILFLQSLPQIVTFPQVLQGCANTLHTLVIENCENLEELPNWLSTFISLKNLGIVNCPKLISLPEDVHHLPNLEGLEMIGCPELYRRYQPEIGQDWYKIENIKGVMVELQEEEEEEEEEDDDDDDDDEEEEEEEVPR 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01650 864 Coils Coil 826 849 - -
Tsu01g01650 864 Pfam Rx N-terminal domain 11 96 IPR041118 -
Tsu01g01650 864 MobiDBLite consensus disorder prediction 836 864 - -
Tsu01g01650 864 Pfam NB-ARC domain 171 388 IPR002182 GO:0043531
Tsu01g01650 864 CDD RX-CC_like 8 134 IPR038005 -
Tsu01g01650 864 Gene3D - 148 321 IPR027417 -
Tsu01g01650 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 422 IPR027417 -
Tsu01g01650 864 Gene3D - 10 124 - -
Tsu01g01650 864 MobiDBLite consensus disorder prediction 834 864 - -
Tsu01g01650 864 PANTHER OS08G0543100 PROTEIN 33 794 - -
Tsu01g01650 864 Gene3D Ribonuclease Inhibitor 503 670 IPR032675 -
Tsu01g01650 864 Gene3D Ribonuclease Inhibitor 671 819 IPR032675 -
Tsu01g01650 864 PRINTS Disease resistance protein signature 192 207 - -
Tsu01g01650 864 PRINTS Disease resistance protein signature 273 287 - -
Tsu01g01650 864 PRINTS Disease resistance protein signature 360 374 - -
Tsu01g01650 864 PRINTS Disease resistance protein signature 650 666 - -
Tsu01g01650 864 Gene3D - 323 413 IPR042197 -
Tsu01g01650 864 PANTHER DISEASE RESISTANCE PROTEIN RP 33 794 IPR044974 GO:0006952
Tsu01g01650 864 SUPERFAMILY L domain-like 478 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01650 Tsu-Chr1 16187943 16190537 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01650 190 811 WRKY Transcription Factor Family AT5G45050 22.238 1.51e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01650 - - mtr:MTR_7g078640 1014.99