Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01647 ATGAGGCTTGACATTCACACCAAGTCCACTATCAAATCCTTGGAGATTGGTGAAAATGCATGTTCATCACAAAATGATGCTATTGAACCTTTATCTCAGAACGCTACTAATGAACATTTATCCCAGAACGCCACTGATGAACCTTTATCTGAGCAAGAAGTGAGAGAATTCATTTGTCGTTATTGTGATAAGAAGTTCTCTACTATCCAAGCACTTGGAGGACACCAAAACGCTCATAAGGATGAGCGTGCCTccataaaaattaaatggaaaaaCAAAGGAGAGAAGAGGAAATTATCTCAACCTAAGATTTAG 315 0.3683 MRLDIHTKSTIKSLEIGENACSSQNDAIEPLSQNATNEHLSQNATDEPLSEQEVREFICRYCDKKFSTIQALGGHQNAHKDERASIKIKWKNKGEKRKLSQPKI 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01647 104 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 88 - -
Tsu01g01647 104 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Tsu01g01647 104 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Tsu01g01647 104 MobiDBLite consensus disorder prediction 29 48 - -
Tsu01g01647 104 Pfam C2H2-type zinc finger 57 81 - -
Tsu01g01647 104 Gene3D Classic Zinc Finger 31 104 - -
Tsu01g01647 104 MobiDBLite consensus disorder prediction 29 51 - -
Tsu01g01647 104 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 88 IPR044246 GO:0009788
Tsu01g01647 104 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01647 Tsu-Chr1 16169872 16170186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01647 55 87 C2H2 Transcription Factor Family AT5G14010 66.667 6.88e-11 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01647 zf-C2H2_6 6.6e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01647 - - cam:101490368 77.7962