Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01638 atgtttatgtttttatttctccTTACCTTAATCAAAACTCCAACAACTACAACAAGCACTGTAATTACTCCAACTACATTCTCCTTTATTTCTTTTAGTCCTGAAAGTTGCAACAATGGTGAATTACTTTGTATGGGATCAGCTACTTCAAGAAATGGTTATGCAAGTCTCACACCAGAGCCAGAAGAAGaacaaaacataataaattcaGGTTCATCTAATATAGATAACAAAGTAGGTAGGGTTTTGTACCCTCATCCAGTTCATGTTTGGCCAGCAATTATTACCACAACATTCACTATTAGGATCACTCCGTTTGCGAAAAACTCGACTAGCTCTGGTGATGGAATGGCACTTGTATTTGCACAAGATAATAGGCCTTCTCCAAATGATAGCTATGGTTCTTATCTTGGCATGTTTGATAGGTCTACACAAGGTGGAAATTATCAACAAATAGGTGTGGAATTGGACACATTCATGAATGAATTTGATCCAGATGGAAACCACATTGGCATAGTGACAACAAGCATAACAAATCCAGTTGCTTTTCATAGTCTCAATAACACTGAAGTTGACCTCAAAAGTGGAAGAGACATTGAGGTTAAAGTTGACTATAATGGATGGACTAAAATGATTTCTATCTCAATTGGATACTCAAATAGCCAATTAAAGAGTGTTCTCAACCATTCAATTAACTTACCTGATATAATTCCAACCTCAGTTTATGTTGGTTTCACAGCCTCAACTGGAAAGACTTTGCCTGAATCGCATCAAATCCTAAATTGGTTTTTCACGTCAGTGCCGTTGCCTGTTCTTTCTGTTAAGCACAGTCCAATTGGAAAATTCAAGATCATAATGATGATTGTTATACCAGTTCTTGTGTTATTTACCTTACTTTCTGTTAGTCGGGAAGCTTGGAAGAGAAGATACGAGAAGAGTGATCGTAAAGAGGACATAGAAAGCCTATCAAGGACGGGTGTAGATGCGCCTAAGATGTTCGGTTACAAGGAACTTTCAAAAGCCACTTGTAAGTTCAGTAAAGAAAATATTGTGGGAAGAGGTGGATTTGGAAGTGTTTATAAAGGCTTCATGCTAGAAAATGGAAAAACCATAGCAGTAAAGAAAATTTCAGCAACTTCTAAGCAAGGTGAAAGAGAGTTCTTGGCCGAAATATGTACCATTGGCCGTCTTCGGCACAAAAACTTAGTGCAACTCCAAGGTTGGTGCAATGAAGGCAAAAACCTTCTCTTGGTTTATGACTACATGCAACATGGAAGCCTTGATCAATTCATAGGCAAAGATATTCTAGATTGGCAAACAAGGCACAAGATATTAACAGGATTAGCATCAGCATTACTTTACCTTCATGAAGAATGTGGAAATCCAGTAGTTCATAGAGATGTTAAACCTAACAATGTAATGCTTGATTCTAATTACAACGCTCATTTAGGCGATTTCGGACTTGCAAGGTTACTCGACAACGAGGATTCAGTAACTACAAACTTAGCCGGAACACCGGGCTATTTAGCACCCGAAATAGGCTTCACAGGAAAAGCTACACCAGAATCAGATGTATATAGCTTTGGAATGGTTATACTTGAAGTCATTTGTGGTAAAAGGTCAAAAAGAGTGATGGAAGATAATAGTTTAGTAGATTATGTTTGGAATTTACAtactcaaaatcaaattattgagTGTGTTGATCAAcaattgaaaaattgttttgatgTTGAAGAAGCTAAAAGATGTTTGATGGTTGGATTGGCATGTTTGCATCCTGATTCTTTGTTTAGACCAAAGATGAGAAAAGTTGTGCACATTTTTTTGAATCCAAATGAACCTTTAATGGAATTGCCGGAAATGCGACCGGCCGGAGTTTATGTATCATTTTCTTGTACTTCAATGACAGATTTTAGATCAAGAACTGAGTTACAGCTTCAATCATCCACAACATCAATGGAGAACATCAGTGATAATTCATTTTGTTTAAATTCATCCTCTGAGTGA 2007 0.3592 MFMFLFLLTLIKTPTTTTSTVITPTTFSFISFSPESCNNGELLCMGSATSRNGYASLTPEPEEEQNIINSGSSNIDNKVGRVLYPHPVHVWPAIITTTFTIRITPFAKNSTSSGDGMALVFAQDNRPSPNDSYGSYLGMFDRSTQGGNYQQIGVELDTFMNEFDPDGNHIGIVTTSITNPVAFHSLNNTEVDLKSGRDIEVKVDYNGWTKMISISIGYSNSQLKSVLNHSINLPDIIPTSVYVGFTASTGKTLPESHQILNWFFTSVPLPVLSVKHSPIGKFKIIMMIVIPVLVLFTLLSVSREAWKRRYEKSDRKEDIESLSRTGVDAPKMFGYKELSKATCKFSKENIVGRGGFGSVYKGFMLENGKTIAVKKISATSKQGEREFLAEICTIGRLRHKNLVQLQGWCNEGKNLLLVYDYMQHGSLDQFIGKDILDWQTRHKILTGLASALLYLHEECGNPVVHRDVKPNNVMLDSNYNAHLGDFGLARLLDNEDSVTTNLAGTPGYLAPEIGFTGKATPESDVYSFGMVILEVICGKRSKRVMEDNSLVDYVWNLHTQNQIIECVDQQLKNCFDVEEAKRCLMVGLACLHPDSLFRPKMRKVVHIFLNPNEPLMELPEMRPAGVYVSFSCTSMTDFRSRTELQLQSSTTSMENISDNSFCLNSSSE 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01638 668 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 267 IPR013320 -
Tsu01g01638 668 CDD STKc_IRAK 351 608 - -
Tsu01g01638 668 SUPERFAMILY Protein kinase-like (PK-like) 329 641 IPR011009 -
Tsu01g01638 668 Pfam Protein kinase domain 346 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01638 668 Gene3D - 24 274 - -
Tsu01g01638 668 ProSitePatterns Legume lectins beta-chain signature. 152 158 IPR019825 -
Tsu01g01638 668 PANTHER - 63 643 - -
Tsu01g01638 668 ProSitePatterns Protein kinases ATP-binding region signature. 351 375 IPR017441 GO:0005524
Tsu01g01638 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Tsu01g01638 668 Pfam Legume lectin domain 26 267 IPR001220 GO:0030246
Tsu01g01638 668 SMART serkin_6 345 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01638 668 Gene3D Phosphorylase Kinase; domain 1 304 421 - -
Tsu01g01638 668 Gene3D Transferase(Phosphotransferase) domain 1 422 614 - -
Tsu01g01638 668 CDD lectin_legume_LecRK_Arcelin_ConA 27 266 IPR001220 GO:0030246
Tsu01g01638 668 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 63 643 - -
Tsu01g01638 668 ProSiteProfiles Protein kinase domain profile. 345 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01638 Tsu-Chr1 16088356 16091446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01638 27 643 Receptor kinase-like Gene Family AT5G55830 38.393 8.16e-124 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu01g01638 Pkinase 6.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01638 - - ccaj:109810929 922.154