LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01624	ATGGCTCCTTCTTCTCCGATCAATACTTCTTCGCAACTTCCTTCAGCCGCAGAGAATGATCTTCAGCCATTCTTTGTACTACATAAAGCTTTACCTCGGAGGAAAGATAGAATGTTAGCCGGACAGGGAAAATCTCGCAAGAGAAATGAGGTTTCTCCTCAATCGTCACAAAGTGCAAAGAAACGAGAAGAAAGTACAAATGAAGAATCTGATCGCCATTTGTTTCAGCAAATGCAGATCAAAGCTTTTAATATTGTTTGGACAAAAATTGAATCTACCATTAAGGATGTCTTGAGAGACCTCAATGCTAGTCTATTCAATAATATACAACACTGGGTTTTGGAGTGCTTCAATACTACCAGATTAGTTGGAGAACCTAGCATTGCTGAAGCAACTCGGTCTTTTCCTGTTCTAAATAATACTACTCCTGGGAAGTTGCACAGTGCATTAGTTATTACCCGAAACATAGAGTTTGTTGATGACATAATAACATTTGAAGAACTTGGCCTTTTCTTGAAATCCCATGGATGTCATGTGGCTATGCTTTCATCAATGGAGTTTTCGTTAAAAAATGGAATTGCTGGTTGCTTGAAAGCTTTATTGCGAGAGTTTCTAGGAGGTTCTTTCGACTCAGCTGATATATCAACCTTAGCATCATGGTATAGAGAACAAGACAACTACAATAAACCACTAGTACTGATCGTTAATGATTTGGAAAGGTGTTGCGGATCAGTCTTAACTGATTTTATCCTGATGTTGAGTGAATGGGTTGTCAAGGTGCCAATCATCTTAATATTTGGAGCTGCAACGTCAGTGGATGCCCCAAGAAACATTTTTCCATCTCATGCTCTTGAGTGTTTGTGCCCTTCTACGTTTATGCTTGTAACACCAGCTGAGAGAATGGATGCAATTGTTGTGGAAGTTCTTGTAAAACATTGCACTACTTTTAATATCGGTCATAAAGTGGCACAGTTATTGAGAAACTACTTCATCAACCAGGATGGGACAGTAACATCTTTTATAAGAGCTTTGAAGGTAGCATGCTTATTACACTTCTCTATGGAACCTTTGAGTCTCATACAGGGGAGAATTCTTGTTGAAGATCAGGATGCAAAATCAGGATTATCACCTGAGACTATGTTGAAATACATGGATGAACTTCCATCATATGCAAGGAATAAAATGGTTGATCAGACTAAGAAGAGCATGGCTGAGAGTTTGTCAGAATTGGTGACAATGCAAAAACTATGGAGCACTGTGGTTCTATGCCTATATGAGGCTGGAAAATATAGCAGAGTGCAGCTGCTGGATTTGTTTAGTGAAGCACTCAATCAAGTTTTGTACCCGTCAAGGGATTCTGTTTGTCATACGAGGGATGAAAAAGACCATGGGTTGGCCTCAACTAGTGATCCCTGTCAGCAATATTCCATCTTGCAAACTGGAGGTTTTATTTGCCAGATAGCACGCAGAGTGAGGGATCTCCCTTCAGGAAAGCTAGATCAATTGATTGATTGCTGGGAAAAAGTTACTGCAGATATTTCAGAGATTCATGAGAAAGTGAAACTCTTGCAATCTTCAGTAAGTTGTAAAGATGGAAAGAGTTCACGCAGGAGTTCCAAGGACATTTCCAAgaGATCTGCGTCCAAAAACATTGACAAGGACTCAAGATTGTCAAACTTTCAAGCTATCACATTTCTTGATGATTTAGTTAGAAATTATTTGAAGCCCATTGAAGGAATGCCTTTCCATGAAATTTTCTGCTTCAACAATGTTGAGAAGCTTCAATTGGTTTTGATGGGAGATCCAAGGAGAAGGATTCAAGTTGATCTTTTGGATTTCCATGATATTTTAGGATGTAGTTGCTGCAAGAAGAGTGGCAAGGCCCTATTGCCATCCATGCATGATTCCTCAATTATGTACTCACTAGCTCAAGAACATGGAGATCTTATCAATCTTCATGATTGGTTCCAGTCATTTAGAACAATTGTTCttcaaaatacaaataaacGGAAACAAAAACCGAAGAACACCCCCTTAtcaaagaagagaaaagaaatgaATGAATCTGGAGACCAAAATGAAGCCTCAATTCAAGCACGATTTTGCAGAGGAGTTACAGAGCTGCAGATCACTGGGCTAGTTCGAATGCCTAGCAAGAGACGTCCAGATTTTGTACAGAGAATAGCATTTGGAATTTGA	2199	0.3874	MAPSSPINTSSQLPSAAENDLQPFFVLHKALPRRKDRMLAGQGKSRKRNEVSPQSSQSAKKREESTNEESDRHLFQQMQIKAFNIVWTKIESTIKDVLRDLNASLFNNIQHWVLECFNTTRLVGEPSIAEATRSFPVLNNTTPGKLHSALVITRNIEFVDDIITFEELGLFLKSHGCHVAMLSSMEFSLKNGIAGCLKALLREFLGGSFDSADISTLASWYREQDNYNKPLVLIVNDLERCCGSVLTDFILMLSEWVVKVPIILIFGAATSVDAPRNIFPSHALECLCPSTFMLVTPAERMDAIVVEVLVKHCTTFNIGHKVAQLLRNYFINQDGTVTSFIRALKVACLLHFSMEPLSLIQGRILVEDQDAKSGLSPETMLKYMDELPSYARNKMVDQTKKSMAESLSELVTMQKLWSTVVLCLYEAGKYSRVQLLDLFSEALNQVLYPSRDSVCHTRDEKDHGLASTSDPCQQYSILQTGGFICQIARRVRDLPSGKLDQLIDCWEKVTADISEIHEKVKLLQSSVSCKDGKSSRRSSKDISKRSASKNIDKDSRLSNFQAITFLDDLVRNYLKPIEGMPFHEIFCFNNVEKLQLVLMGDPRRRIQVDLLDFHDILGCSCCKKSGKALLPSMHDSSIMYSLAQEHGDLINLHDWFQSFRTIVLQNTNKRKQKPKNTPLSKKRKEMNESGDQNEASIQARFCRGVTELQITGLVRMPSKRRPDFVQRIAFGI	732

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01624	732	MobiDBLite	consensus disorder prediction	667	694	-	-
	Tsu01g01624	732	MobiDBLite	consensus disorder prediction	32	71	-	-
	Tsu01g01624	732	PANTHER	ORIGIN RECOGNITION COMPLEX SUBUNIT 3	15	731	IPR020795	GO:0003677\|GO:0005664\|GO:0006260
	Tsu01g01624	732	Pfam	Origin recognition complex winged helix C-terminal	603	730	IPR040855	-
	Tsu01g01624	732	Pfam	Origin recognition complex (ORC) subunit 3 N-terminus	61	359	IPR045667	-
	Tsu01g01624	732	PANTHER	ORIGIN RECOGNITION COMPLEX SUBUNIT 3	15	731	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01624	1	701	Core DNA Replication Machinery Family	AT5G16690	44.986	0.0	593

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01624	K02605		-	gmx:100780646	1082.78