Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01621 ATGGCTCTGGAACTTGTTGCTGGACCTTTAATGGGGGCTGTTTTCAATGTGTTGTTTGAAAGGATAGCTTCTTCTGAGGTTGTAAACTTCtttaagaacaaaaaaagtgagaatttattgaaaagattgaagatcatCTTGTTATCAATCCATGCTGTACTCAATGATGCCGAAGAAAAGCAAATGAAAAATGAAGCTGTGAAGGAGTGGCTTGAGGAGCTTAAAGATGTTGCCTTTGATGCTGATGATCTACTTGATGAGATCTTTACTGGTGAAAAAATGAAGACAAAAGAGGTAAACACATTCAACTCAACTTCAACAAGTTTTTATGATAAAGATCTTGCAAAGAAGATAGAAGATGTTTATGAAAGATTAGAGTTtgttataaaattgaaagaagtaCTTGATTTGAAGGTGTGTAAGGAAGTGAAAGTGACACATAAGAGACCAACTTCATCTGTTGTTGAAGCATGTGATGTGTATGGAAGGGATAATGATAAAGATATCTTGGTTAACTTGTTATTGTCacatgatgttgatgatgaaaaaCTAGGTGTTATTCCAATTGTTGGTATGGGAGGAATTGGGAAAACTACTTTAGCTCAATTAGTTTATAATGATCATAGAGTACAGAAGGAGTTTGATCTTAAAGCTTGGATTTATGTCTCTGAAGAATTTGATATTTGCAAGATTACAAAGAATCTTTTGGAGGTTATTACTTTGTGTAGTTGTGATGTTGAAGATTTAAATTCAATACAAAGGAATCTGAAAATGTACATACAgaagaaaaagtttttatttgttttggatGATGTTTGGGATGAAAACTATGAGAATTGGGACAAATTCAGGAGTCCGTTTAAACATGGAGGGGCTAACGGAAGTAAGATTATTGTTACTACTCGAAGTAGGAATGTTGCATCTATCATGCAAACGTTTCCGCCTTATAATCTTACTGAATTGTCTAATGACGATTGTTGGGAATTGTTTTCAAACCATGCGTTTGGTTATGGCCATAAGGATTCAAATGTTCATCAACAAAGTGTATGCAAAGTTGGAAGAGAAATAGTTAGAAAGTGCAAAGGATTGCCTTTGGCTGTGAAGACACTTGCAGGACTTTTGAGGTCAAAAAGTGATACACAAGAATGGCAGAAAGTACTGAACAGTGAGATATGGGATTTACAAGATCACGAGAGTAATATTCTTCCAGCTTTGAGATTAAGTTACCATTATCTTCCTTCTCATTTAAAGAGATGTTTTGCATATTGTGCAATTTTTCCAAAAGATTATGAATTTGATAAGGAGAAGCTAATTTTGTTGTGGATGGCAGAAGGGTTGCTCAACCAATCAAAAAGACATAGAAGAGTTGAAGAAGTTGGAAATGAGTATTTTTGTGAATTAGTATCAAGATCATTCTTTTACCAatcaagaagtggaaaatcATGTTTCTTAATGCATCATCTTATAAATGACTTGGCTCAATTTGTATCCGGAACATTTTCTGTGAGAATAGAAGATAGCAATTCTGATCAAGTTATGGAAAGAACTCATTATTTGTCTCACATAATTTCACATTGTTCCTCATATGTAAACCTGAAAGATGTTAGCAAAGCAAATCACCTACGTACCTTTATGCAAATAAGAACAATAGGTACATCCATTGACATGTTCGACGACATGCCAAATGATCTTTTGACAAAGCTAAGGTACTTAAGGGTGTTAACCCTGGTAGGTGCTTACTTCTACAATTTACCTGATTCAATAGGTGAACTAAAACATCTGCGCTCTCTAGAAGTGTCTGACACCGAGATTACAAGGTTACCTGACTCCATCTGCAGTTTGTACAATTTACAAACACTCAAGTTAGTTGGTTGTTATAATCTTATTGAACTTCCAAAAGATATTCATAAACTTGTCAACTTGCGCTACTTGGATATTAGAGGCACTTGTTTGAAGTGGATGCCATTGAAAATCAGTGAATTGAAAAATCTTCAAAAGTTGAGTGACTTTTTTGTTGGTGAAGATCAGGGATCTTGCATTAGTGAACTGGGAGAGCTATGTAATTTACATGGATCATTGTTCATTCATGACATAGAACATGTTGTCAATTATAAGGATTCTGAGAAGgcaaaattgaaggaaaaacatGGCCTTGAAAAATTGTCTTTGGATTGGGGTGGAAGTGGTGATACCGATAACTCACAGCATGAAAAGATAATACTGCACAGCCTCGAACCACACACCAATTTGAAGGAGCTTGATATCAATGACTATCCAGGCACTGAATTTCCAGATTGGTTAGGGGACTACTACTTTTGCAACATGGTGTCCTTAAAGCTCAAAGGATGTAAATATTGCTATAAGTTGCCTCCACTTGGACAACTGCCGATGTTGAAAGAGCTTcatattattaaatttgaagGATTAATGAGTGTAGGATCCGAGTTTTACGGAAATAGAACTTCTTTAAGTACTGATAGCTTTCCTGCATTGGAAATTCTAAGGATCGAGTCTATGTCAGCATGCGAGAAATGGTGTTTTGATGCAAACAATGTAGGCAGCAGAGCTTTCAGTCATCTTAGGGAGTTTTATATTGAAAGCTGTCCCAAACTGACGGGGAACTTACCAAGTAGTCTTCCATCTTTGACATTACTTGTTATCAGAGATTGCAAACGTTTGATTTGTCCACTTCCGAAATCTCCAAGTCTGCGCGTGCTCAACATTCAGAATTGTCAGAAGCTAGAATTCCATGTACATGCACCTTGGTACCACCAATCACTTACATCTTTGTACTTGATTGATAGCTGTGACTCACTCATGTTCTTGCCTTTAGATCTTTTCCCAAACCTCAAGTCTTTGGATATTTGGGGATGCAAAAATCTGGAAGAACTTTCTGTTTCAGCATCAGATGTTTCTCCAAATTTCAAGTCCCTCAATTCCATGTGCATAAGACATTGTCCAAATTTCACATCATTTCCTAAGGGAGGATTTGCAGCCCCAAAGCTTAACTTGTTAACCATAAACTACTGTCAGAAGTTGAATTCTCTGCCTGAAAATCTGCATGAGTTAATGCCAAGCTTGAAAGAACTTCAACTAAGGGGTTGTCCACAAATTGAGTCATCTCCTATGAGGCCGCTCAGGATTCGGATTAGTAACAAACTCATGGAAGGGAAACAAAACCACTCTGATCCTCTCTTTGCAAGGTTGGAAGGTCTAGTCTCTGGACACAGTCCCTCATCAAGTTAG 3246 0.3527 MALELVAGPLMGAVFNVLFERIASSEVVNFFKNKKSENLLKRLKIILLSIHAVLNDAEEKQMKNEAVKEWLEELKDVAFDADDLLDEIFTGEKMKTKEVNTFNSTSTSFYDKDLAKKIEDVYERLEFVIKLKEVLDLKVCKEVKVTHKRPTSSVVEACDVYGRDNDKDILVNLLLSHDVDDEKLGVIPIVGMGGIGKTTLAQLVYNDHRVQKEFDLKAWIYVSEEFDICKITKNLLEVITLCSCDVEDLNSIQRNLKMYIQKKKFLFVLDDVWDENYENWDKFRSPFKHGGANGSKIIVTTRSRNVASIMQTFPPYNLTELSNDDCWELFSNHAFGYGHKDSNVHQQSVCKVGREIVRKCKGLPLAVKTLAGLLRSKSDTQEWQKVLNSEIWDLQDHESNILPALRLSYHYLPSHLKRCFAYCAIFPKDYEFDKEKLILLWMAEGLLNQSKRHRRVEEVGNEYFCELVSRSFFYQSRSGKSCFLMHHLINDLAQFVSGTFSVRIEDSNSDQVMERTHYLSHIISHCSSYVNLKDVSKANHLRTFMQIRTIGTSIDMFDDMPNDLLTKLRYLRVLTLVGAYFYNLPDSIGELKHLRSLEVSDTEITRLPDSICSLYNLQTLKLVGCYNLIELPKDIHKLVNLRYLDIRGTCLKWMPLKISELKNLQKLSDFFVGEDQGSCISELGELCNLHGSLFIHDIEHVVNYKDSEKAKLKEKHGLEKLSLDWGGSGDTDNSQHEKIILHSLEPHTNLKELDINDYPGTEFPDWLGDYYFCNMVSLKLKGCKYCYKLPPLGQLPMLKELHIIKFEGLMSVGSEFYGNRTSLSTDSFPALEILRIESMSACEKWCFDANNVGSRAFSHLREFYIESCPKLTGNLPSSLPSLTLLVIRDCKRLICPLPKSPSLRVLNIQNCQKLEFHVHAPWYHQSLTSLYLIDSCDSLMFLPLDLFPNLKSLDIWGCKNLEELSVSASDVSPNFKSLNSMCIRHCPNFTSFPKGGFAAPKLNLLTINYCQKLNSLPENLHELMPSLKELQLRGCPQIESSPMRPLRIRISNKLMEGKQNHSDPLFARLEGLVSGHSPSSS 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01621 1081 Pfam Rx N-terminal domain 11 90 IPR041118 -
Tsu01g01621 1081 PANTHER DISEASE RESISTANCE PROTEIN RP 23 913 IPR044974 GO:0006952
Tsu01g01621 1081 Gene3D Ribonuclease Inhibitor 893 1054 IPR032675 -
Tsu01g01621 1081 SUPERFAMILY RNI-like 854 1043 - -
Tsu01g01621 1081 SUPERFAMILY L domain-like 485 892 - -
Tsu01g01621 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 423 IPR027417 -
Tsu01g01621 1081 Pfam NB-ARC domain 179 389 IPR002182 GO:0043531
Tsu01g01621 1081 Gene3D - 141 313 IPR027417 -
Tsu01g01621 1081 Gene3D Ribonuclease Inhibitor 531 892 IPR032675 -
Tsu01g01621 1081 PANTHER OS05G0414200 PROTEIN 23 913 - -
Tsu01g01621 1081 PRINTS Disease resistance protein signature 186 201 - -
Tsu01g01621 1081 PRINTS Disease resistance protein signature 259 273 - -
Tsu01g01621 1081 PRINTS Disease resistance protein signature 360 374 - -
Tsu01g01621 1081 PRINTS Disease resistance protein signature 945 961 - -
Tsu01g01621 1081 Gene3D - 320 407 IPR042197 -
Tsu01g01621 1081 CDD RX-CC_like 49 88 IPR038005 -
Tsu01g01621 1081 Gene3D - 408 495 IPR036388 -
Tsu01g01621 1081 Gene3D - 14 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01621 Tsu-Chr1 15938386 15941855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01621 187 655 WRKY Transcription Factor Family AT5G45050 22.332 1.23e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01621 - - ccaj:109812375 1672.52