LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01620	ATGGATGATGATTACATCATGGACATGGAAATGGACATCGATGTTCCTCTCCCCGAAGAACTCGAATTACTCGAATCAACTTATCGAATCTACGAACAAGACGAAGAAGACAACTACTTTTACCAACCACCCGAAGACAAAACCGAACCCGAACAACAACCGCCACAAGATCTCGCTTCTCCTTCTGAACCTCAATCAAACAGCCACAAGCGTTCTCGATCGAAATCGAATTCGGATTCCGATTTGGATGATTTGGATTCTTCTGGCGTTGAAAAAAGGGAGAAAGTTAGGGTTAGGGTTGAAGATCCACCGGTTGAAGAGGATTGGCTTCGATACTCTCCTCCTCCTACTACTACTCCAGTTGAAGAAGTGAGATTCTCTAAGGAGAAGACGTTGTCGAGATTTGCGTCGGAGATTGATGGTGAAGTTATGCCGATTACTGCGCCTAATGGTGATAGGGTTTATACTAAGCTTGATAGGTTCTATGGAGAAGAGCAAGTAACGAAGCTGAATTGTAGAGGATATTCTTCTGATCTTGCTATAGAACCGATTAGTGTTCTGTTTGAAAGGTTGGAGCAAGAGACTTTTGCTAAGACCTTGGAAGCTAGTTCTGAAAGCCAAAGTGTTGTAGATGTTCCTGAAACACTAACAATCCATGAAAAACTTTGGGTTGATAAATATGCTCCAAAGTCGTTTAGTGATCTTCTTAGTGATGAACAGACAAATCGTGAGGTACTGTTGTGGTTAAAACAATGGGATTCTACTGTGTTTGGATCTGAAATACGAAGTACATCAGACGATGTTTTGTCTGCTTTGAAACGGCATTCTTCTATTTCCCATAAACCGAAACCTACGGGTTCAAATTTTCCAAGAACAAATGGAGGGCACAATTGGAGTAGTAACAGGTATACAAATTCTAGAAGTACAGCGGAGAGCGGAAATTCAACGAGTATTCAGGATATACGCAATAGGAAGTCACGGAATATTGGCACACCAGAACAGAAgATCCTTCTGCTATGTGGACCACCAGGTCTCGGAAAAACAACACTTGCACATGTAGCTGCTAGGCATTGTGGATATCACGTGGTAGAGgttaATGCCAGTGATGATCGTTCTACATCAACAATTGAAGCAAAAATTCTTGATGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGGGATGGAAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCTGATGCAGGGAAGCAAAGTTTGGATAAAGGACAAATGGAAAGGAAATCATCAAAGAAGGGGAGAAAAACTGCATCCCTGTCAAGACCTGTGATTTGCATATGTAATGACCTATATGCACCTGCCTTAAGATCATTACGCCAGGTGGCCAAGGTTCATATATTTGTTCAACCAACAGTTAGTCGGGTGGTAAGCAGactaaaatatatatgtaacaaGGAGGGGGTAAAAGCCAGTGCCATTGCACTCACTGCTTTAGCAGAATATacagCATGTGATATACGCTCATGCTTGAACACACTCCAATTTCTCTCTAAGAAGAAAGAAACCCTCAATGCGTTTGATATTGCTTCGCAAGTTGTTGGTCAGAAGGACATGTCAAAAAATGTTCTGGACATCTGGAAAGAGTTGTtccaaagaaaaagaacaagaaaGATGGAAAGAAAATCTCATAATAGCAAATTCTCTGAATTTGATaccttgtactcccttatatCATACCGTGGTGATAGTGACCTCATTCTGGATGGAATTCATGAAAATATTCTGCAGCTCAATTATCATGATCCAGTTATGCAGAAAACTGTCAAGTGCCTCAACAGTCTTGAAGTTTATGATCTGTTGCATCAATATATAATGCGTACACAACAAATGCCTCTCCTTGTTCATTTGCCTGCCATAGCAATTATTGTACATCATACAGTAGCTCAAATTCAGAAGCCTAACATTGAGTGGCCAAAGTCATATCACAGGTATCGAACAACGATGATGGAAAAGATGGACATTTTGAATACTTGGCACTTCAAAATATCGCCACATATTGCAAGGCACTTATCACCCACTTCCTTTGTTGAAGACTTAATTTCTCCATTGTTGGATATTCTGTCCCCACCAACCATAAGACCGgtGGCATTACAACTACTATCGGATAAGGAGAAGAATGATATTGCTCAATTAGTTAGCACAATGGTTTCATATGCTATCAcatataagaaaattaaatcaGATGCACTGCCTAATACCCTGAAGTATGAAGTAGCAGATGAATTGTCTTTGTCTCTTGTTCCTTCTATCGGtaactttgtaaattttaagGATTATACTTCAGACCATTACGTGCTTTCTTTAGCTATGAAGCAGGTTTTGGTGCATGAAGTTGAAAAGCATAAGATTTTACAAGCTAATGCTAAAATTGCAACTTTAGCAAATGGAGGGCATGAAGTTAATGAGGCTGAAAATAGCATCAAATTAGCCAATACCAAGAATCATGCAGCTGTAGTTGATATGAAAACCATTGAAAGTCAAACTAATGTTTTAGCAAGGAAATCAAATGAATATCCCAAAACAGTTTCACCAAACTTGAATCCCACTAAAAGTGCCAATACAACCGACAGTGCGAAACTTCTAGACATGGGAAATAAGAAAAAACCATCTAGGAGTTCCGCAAGTTTCTTCGACAGGTTTAAAAAGTCAAGTGTTAAGGGACTCCAAAATGATGACAGATCTCTACAGAAAGAAACTACATCAGAGAAAGCTCAAAGCcctttactttttaaatttaatgagGGTTTTACGAATGCAGTCAAAAGGCCTGTTCGAATTCGTGATTTTCTGTCCTAG	2898	0.3858	MDDDYIMDMEMDIDVPLPEELELLESTYRIYEQDEEDNYFYQPPEDKTEPEQQPPQDLASPSEPQSNSHKRSRSKSNSDSDLDDLDSSGVEKREKVRVRVEDPPVEEDWLRYSPPPTTTPVEEVRFSKEKTLSRFASEIDGEVMPITAPNGDRVYTKLDRFYGEEQVTKLNCRGYSSDLAIEPISVLFERLEQETFAKTLEASSESQSVVDVPETLTIHEKLWVDKYAPKSFSDLLSDEQTNREVLLWLKQWDSTVFGSEIRSTSDDVLSALKRHSSISHKPKPTGSNFPRTNGGHNWSSNRYTNSRSTAESGNSTSIQDIRNRKSRNIGTPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEVLLKMISAERKPDAGKQSLDKGQMERKSSKKGRKTASLSRPVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVSRLKYICNKEGVKASAIALTALAEYTACDIRSCLNTLQFLSKKKETLNAFDIASQVVGQKDMSKNVLDIWKELFQRKRTRKMERKSHNSKFSEFDTLYSLISYRGDSDLILDGIHENILQLNYHDPVMQKTVKCLNSLEVYDLLHQYIMRTQQMPLLVHLPAIAIIVHHTVAQIQKPNIEWPKSYHRYRTTMMEKMDILNTWHFKISPHIARHLSPTSFVEDLISPLLDILSPPTIRPVALQLLSDKEKNDIAQLVSTMVSYAITYKKIKSDALPNTLKYEVADELSLSLVPSIGNFVNFKDYTSDHYVLSLAMKQVLVHEVEKHKILQANAKIATLANGGHEVNEAENSIKLANTKNHAAVVDMKTIESQTNVLARKSNEYPKTVSPNLNPTKSANTTDSAKLLDMGNKKKPSRSSASFFDRFKKSSVKGLQNDDRSLQKETTSEKAQSPLLFKFNEGFTNAVKRPVRIRDFLS	965

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01620	965	MobiDBLite	consensus disorder prediction	869	910	-	-
	Tsu01g01620	965	MobiDBLite	consensus disorder prediction	26	100	-	-
	Tsu01g01620	965	Gene3D	-	484	554	-	-
	Tsu01g01620	965	PANTHER	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	11	964	-	-
	Tsu01g01620	965	MobiDBLite	consensus disorder prediction	53	67	-	-
	Tsu01g01620	965	MobiDBLite	consensus disorder prediction	26	44	-	-
	Tsu01g01620	965	MobiDBLite	consensus disorder prediction	275	326	-	-
	Tsu01g01620	965	MobiDBLite	consensus disorder prediction	869	894	-	-
	Tsu01g01620	965	MobiDBLite	consensus disorder prediction	68	100	-	-
	Tsu01g01620	965	MobiDBLite	consensus disorder prediction	428	449	-	-
	Tsu01g01620	965	MobiDBLite	consensus disorder prediction	281	325	-	-
	Tsu01g01620	965	CDD	HLD_clamp_RFC	484	542	-	-
	Tsu01g01620	965	Gene3D	-	220	482	IPR027417	-
	Tsu01g01620	965	CDD	AAA	319	426	-	-
	Tsu01g01620	965	SMART	AAA_5	333	487	IPR003593	-
	Tsu01g01620	965	MobiDBLite	consensus disorder prediction	428	447	-	-
	Tsu01g01620	965	Pfam	ATPase family associated with various cellular activities (AAA)	337	463	IPR003959	GO:0005524\|GO:0016887
	Tsu01g01620	965	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	221	539	IPR027417	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01620	334	547	Core DNA Replication Machinery Family	AT5G22010	30.568	2.67e-14	75.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01620	K11269		-	gmx:100785041	1311.98

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu01g01620	01	15918096	15935577	Tsu01g01620	01	15918096	15935577	ECH