Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g01617 | ATGTCTAGGAACATCAAGGAGGGGAGAGGTTTTGCCGAAGGgcattatgttattttattgcTATTGACTTTACTTCTTTGTAGCACAGAAGGGTTGAATTTAGAGGGACAAACCCTGTTGGAGATTAAAAATGGACTTCATGATAAAATTAATGGTTTGGTAAATTGGAATTCTAGTGATGAAACTCCATGTGGATGGGTAGGTGTAACTTGCAGTTATGGTTATAATAGTGGTAGTGATCCGGTTGTTATTTCGCTTAATTTGAGTTCTATGAATCTTTCTGGAACTTTAAATGCTAGCATTGGAGGACTTACCAATTTAACTTATCTCAATCTTGCTTACAATAGTCTTATTGGAAATATCCCTAAGGAGATTGGTGAGTGTTTGAGTTTAGAATATCTTTACTTGAACAATAATCAATTCGAGGGACCAATTCCTGTTGAATTAGGGAAACTGTCCCTTTTgagaaatttgaatatttgCAACAATAAACTCTCCGGTGTTATTCCGGATGAGTTTGGAAAGTTGAGTTCATTGGTTGAGTTAATTGCTTACAGCAATTTTCTCGTTGGCCCTTTGCCGAATTCGGTTGGAAATCTTAAGAATCTTGCAACTTTCAGAGCTGGGGCGAATAACATTACTGGTAGCTTGCCGAAGGAAATTGGCAGATGCAAGAGTTTGGTACGTCTTGGTCTTGCTCAAAATCAGATCGTAGGGGAGATACCAAGTGAGATTGGGATGCTCGAAAGATTAAAAGAATTGGTTTTATGGGAAAACCAATTGTCAGGGGTTGTTCCTAAAGAGCTTGGGAATTGTGGCAGACTTGAGATCCTTGCTCTATACGGGAATAATCTCATTGGACCGTTACCTCGTGAGATTGGGAACCTAAAATCGTTGAAGTGGTTGTATCTTTACAGGAATAAGTTGAATGGATCCATTCCAAGGGAAATTGGAAATCTTTCTAAAGCCTTACACATTGATTTCTCGGAGAACTCTTTAGCCGGAAATATCCCTTCAGAGTTCAGCAAAATTCGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCATTTAACCGGCGTTATACCGAATGAGTTTGGTAACTTGAAGAACCTGACGAAGCTGGACCTGTCGATAAATAACATTACAGGTCCGATTCCGCATGGCTTCCAATATTTGACTCATATGTCTCAGTTGCAACTTTTTGACAACTCTTTAAGCGGTACTATTCCTCAGGGACTTGGACTTCATAGTCGTCTTTGggtggttgatttttctgacaACAACTTGACAGGAAATATACCTCCTCATCTATGCCGAAACTCTcatttgatgatgttgaatGTAGCAAATAATCAGCTTTACGGAAACATACCGACAGGGATATTAAACTGTGAATCATTGGCACAGTTGCTGTTGATCGGTAACAGGCTTACCGGCGGCTTCCCTTCGGAATTGTGTAAACTGGAGAATCTAACTGCCATTGATTTGAATGATAACATGTTCAGTGGTCCACTTTCTAGTGAGATCGCAAACTGCCACAACTTGCAAAGGCTTCACATTGCAAACAATTACTTCACAATGGAGTTGCCGAAAGAAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCATCAAATCTTTTCAAAGGAAGAATCCCACCAGAAATTTTTTGGTGCCAAAGGCTGCAGCGGCTTGATCTCAGTCAGAATCGTTTTACCAGTTCTTTGCCAAATGAAATTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCAGACAATAAATTGTCTGGAAATATTCCTGCAGCAGTAGGCAATCTGTCTCATTTGAACTGGTTGCGGATGGATGGCAATTTGTTTTCCGGTGAAATACCTCCTGAGTTAGGTTCTCTTTCGAGCTTACAGATtgaaatggatctcagttacaaTAATCTTTCTGGAAGAATACCATCTCGGCTTGGAAATCTCAATATGCTTGAAAATCTCTTTCTCAATAACAACTATTTGGAAGGTGAAATTCCAAGTACCTTTAGTGCGCTTTCAAGCTTGATGGGGTGTAATTTCTCATACAATAACCTCTCCGGACCTATCCCTTCCACTAAAATTTTCGAAAGTATGGCTATAAGCAGCTTTGTTGGTGGTAACATAGGCCTTTGTGGTACACCTCTCATTGACTGCAATAGCATTTCATCTTCTCGCTCGATTCCTCCTAGGAAAGACGTTGATTCTCCTCGTGCTAAAATTGTCATGATCATTGCAGCTACTGTCGGCGGTGTTTCtctcattttgattttagtgATTTTATATCTTATGAGACAACCTCGAGAGGCTGTTGATTCATTTGCTGACACCGAAACTCAATCCCCAGATTCAGATATCTATTTTCCTCCAAAGGACGGTTTCACGTTCCAAGACTTACTTGAAGCTACAAAAAGATTTCATGAAAGTTATGTCATTGGTAGCGGAGCATGTGGAACAGTTTATAAGGCGGTTATGAAATCTGGTAAGACCATCGCTGTAAAGAAGTTAGCATCGAACCGGGAGGGGAACAATGTCGATAATAGTTTCAGAGCTGAAATATCGACTCTAGGAAGGATTAGGCATCGGAATATAGTGAAGCTGTATGGTTTTTGCTATCACCAAGGTTCAAACCTCTTACTTTATGAATACATGGAAAGAGGTAGCTTAGGTGAATTATTGCATGGTTCTGCAAGTAATTTGGAGTGGCCGACTCGATTCATGATTGCTCTTGGAGCTGCTGAAGGTCTTGCTTACTTGCATCATGACTGTAAACCGAAGATTATTCACCGTGACATCAAATCTAACAACATTCTGCttgatgaaaattttgaggCCCATGTAGGTGATTTCGGCTTGGCAAAAGTGATTGACATGCCTCAGTCAAAATCGATGTCCGCAGTTGCCGGATCTTATGGTTATATTGCTCCTGAATATGCATATACCATGAAGGTTACGGAGAAATGCGACATATATAGTTACGGTGTTGTGCTCTTGGAATTACTAACTGGAAAAACACCGGTTCAACCAATGGAGCAAGGAGGTGATCTTGTCACATGGACAAGAAACCATATTCGGAACAATAACAATACATTGAGCTCAGAGATGCTAGACAATCGTCTAGATCTCGAAGACCAAGTAACTATAAATCACATGCTCACTGTTTTGAAACTTGCTTTAATGTGCACAAGTATGGCTCCTACTAAAAGGCCATCAATGCGCGAAGTTGTGTTGATGCTCATCGAGTCAAATGAGCGAGAAGGAAACTTAACACTCACTCAAACAAATCATGACCCTCCTTCCAAAGATAGCACATGA | 3339 | 0.3893 | MSRNIKEGRGFAEGHYVILLLLTLLLCSTEGLNLEGQTLLEIKNGLHDKINGLVNWNSSDETPCGWVGVTCSYGYNSGSDPVVISLNLSSMNLSGTLNASIGGLTNLTYLNLAYNSLIGNIPKEIGECLSLEYLYLNNNQFEGPIPVELGKLSLLRNLNICNNKLSGVIPDEFGKLSSLVELIAYSNFLVGPLPNSVGNLKNLATFRAGANNITGSLPKEIGRCKSLVRLGLAQNQIVGEIPSEIGMLERLKELVLWENQLSGVVPKELGNCGRLEILALYGNNLIGPLPREIGNLKSLKWLYLYRNKLNGSIPREIGNLSKALHIDFSENSLAGNIPSEFSKIRGLSLLFLFENHLTGVIPNEFGNLKNLTKLDLSINNITGPIPHGFQYLTHMSQLQLFDNSLSGTIPQGLGLHSRLWVVDFSDNNLTGNIPPHLCRNSHLMMLNVANNQLYGNIPTGILNCESLAQLLLIGNRLTGGFPSELCKLENLTAIDLNDNMFSGPLSSEIANCHNLQRLHIANNYFTMELPKEIGNLSQLVTFNVSSNLFKGRIPPEIFWCQRLQRLDLSQNRFTSSLPNEIGTLQHLEILKLSDNKLSGNIPAAVGNLSHLNWLRMDGNLFSGEIPPELGSLSSLQIEMDLSYNNLSGRIPSRLGNLNMLENLFLNNNYLEGEIPSTFSALSSLMGCNFSYNNLSGPIPSTKIFESMAISSFVGGNIGLCGTPLIDCNSISSSRSIPPRKDVDSPRAKIVMIIAATVGGVSLILILVILYLMRQPREAVDSFADTETQSPDSDIYFPPKDGFTFQDLLEATKRFHESYVIGSGACGTVYKAVMKSGKTIAVKKLASNREGNNVDNSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKTPVQPMEQGGDLVTWTRNHIRNNNNTLSSEMLDNRLDLEDQVTINHMLTVLKLALMCTSMAPTKRPSMREVVLMLIESNEREGNLTLTQTNHDPPSKDST | 1112 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g01617 | 1112 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 935 | 947 | IPR008271 | GO:0004672|GO:0006468 | |
| Tsu01g01617 | 1112 | SUPERFAMILY | L domain-like | 396 | 706 | - | - | |
| Tsu01g01617 | 1112 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED | 4 | 1098 | - | - | |
| Tsu01g01617 | 1112 | Gene3D | Ribonuclease Inhibitor | 157 | 415 | IPR032675 | - | |
| Tsu01g01617 | 1112 | Gene3D | Ribonuclease Inhibitor | 416 | 731 | IPR032675 | - | |
| Tsu01g01617 | 1112 | SMART | LRR_typ_2 | 536 | 560 | IPR003591 | - | |
| Tsu01g01617 | 1112 | SMART | LRR_typ_2 | 104 | 128 | IPR003591 | - | |
| Tsu01g01617 | 1112 | SMART | LRR_typ_2 | 296 | 320 | IPR003591 | - | |
| Tsu01g01617 | 1112 | SMART | LRR_typ_2 | 392 | 416 | IPR003591 | - | |
| Tsu01g01617 | 1112 | SMART | LRR_typ_2 | 248 | 271 | IPR003591 | - | |
| Tsu01g01617 | 1112 | SMART | LRR_typ_2 | 368 | 391 | IPR003591 | - | |
| Tsu01g01617 | 1112 | SMART | LRR_typ_2 | 152 | 175 | IPR003591 | - | |
| Tsu01g01617 | 1112 | SMART | LRR_typ_2 | 632 | 657 | IPR003591 | - | |
| Tsu01g01617 | 1112 | SMART | LRR_typ_2 | 584 | 608 | IPR003591 | - | |
| Tsu01g01617 | 1112 | Pfam | Leucine rich repeat | 250 | 309 | IPR001611 | GO:0005515 | |
| Tsu01g01617 | 1112 | Pfam | Leucine rich repeat | 562 | 620 | IPR001611 | GO:0005515 | |
| Tsu01g01617 | 1112 | Pfam | Leucine rich repeat | 346 | 405 | IPR001611 | GO:0005515 | |
| Tsu01g01617 | 1112 | Gene3D | Ribonuclease Inhibitor | 34 | 156 | IPR032675 | - | |
| Tsu01g01617 | 1112 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 4 | 1098 | - | - | |
| Tsu01g01617 | 1112 | SUPERFAMILY | Protein kinase-like (PK-like) | 791 | 1087 | IPR011009 | - | |
| Tsu01g01617 | 1112 | Pfam | Protein kinase domain | 815 | 1084 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu01g01617 | 1112 | SMART | serkin_6 | 814 | 1087 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu01g01617 | 1112 | ProSiteProfiles | Protein kinase domain profile. | 814 | 1088 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Tsu01g01617 | 1112 | Gene3D | Transferase(Phosphotransferase) domain 1 | 892 | 1105 | - | - | |
| Tsu01g01617 | 1112 | Gene3D | Phosphorylase Kinase; domain 1 | 780 | 891 | - | - | |
| Tsu01g01617 | 1112 | SUPERFAMILY | L domain-like | 36 | 331 | - | - | |
| Tsu01g01617 | 1112 | Pfam | Leucine rich repeat N-terminal domain | 33 | 72 | IPR013210 | - | |
| Tsu01g01617 | 1112 | SMART | LRR_sd22_2 | 296 | 322 | - | - | |
| Tsu01g01617 | 1112 | SMART | LRR_sd22_2 | 584 | 610 | - | - | |
| Tsu01g01617 | 1112 | SMART | LRR_sd22_2 | 488 | 511 | - | - | |
| Tsu01g01617 | 1112 | SMART | LRR_sd22_2 | 104 | 123 | - | - | |
| Tsu01g01617 | 1112 | SMART | LRR_sd22_2 | 368 | 394 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g01617 | Tsu-Chr1 | 15884897 | 15889877 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu01g01617 | 32 | 1089 | Receptor kinase-like Gene Family | AT4G26540 | 38.011 | 0.0 | 639 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | RLK-Pelle_LRR-XI-1 | Tsu01g01617 | Pkinase | 1.5e-51 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu01g01617 | - | - | gmx:100805792 | 1760.35 |