Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01616 ATGAGAAAGCGAATTAGAGATAATAAAGAGGTTGGAGTGTCTAATGGAATGCATTGCCATCATACTCATCCAGGAAGAGTATGGGGAATTCTTCATGTTATAAAGTATCATCATTGGCGTCATGTCAAGAGAAGGATTACACCTAGAAGGTGTAATGGTGGAAGTCATAATGCAAGTAAGTCCAATGTTGAAGAAAATAAGCTGGTAAACTCTACTCCACATACCAAACATTCTATAAAATCAAGACTAAAATCACTTCTACATGAAGATATATACAAAAAGAAAGGTAGACATAAGAGAAGTTCAACCTGCCCTGCAAAGCCGCAGTTAACTCCCCCCGAATCCGTTCATAACCTCGAGGTTGATCCACTCAGCGAAATGTTGTTAACTGTTGAAAATCCAGAACCAGTTATAGAAACTTTTCAAAACCATCTTGCTTCAGGAACATTGGATGTTTTGTCACCGGTTTTCTCAGGTAGCAATAAATCGATCAACAGCAATAACACCAACAGCGATAAATGTGTCGAATGTGGTGCGCTGTTTTCTAGTGAGCCGTTGGAAAATCATGATGATAAGATTCATCATAAGCATCACAATATATCGATAAGTGAAGGTTTGCCAGAAGATAAATTGATGAATGCGAAAATATTTACGACTGATGCTTCACCACATCTTTTCAAGGATTTTCTTGATGCTTTAGAAGTAATCAATACAAACAAAGACTTTCTAATGAAATATATCAATGATCCTGGATCTCCTTTGCCGTTCGAAATTCATACTCAACAACAGTCTCCTAATTTTAAACCAAGACGCGCCAAATCAATTTCGTTACCTGTTTATGGATCATCCTCAGGAACCAAAGATTCTGAACACACGGTATCTGAATTGATCGATACAAAAGGGAAGATACAATCAGAAATTCAAAATGTAGGAGATTTACACAAACcatcaacttcttcttcttcttcgcatAAAGTTGATGAGGTACTCAATTCAGATCAAGAATCGGTTGAacgagaaaataaaaatatttcatcaGATTCGTCACATTCACAGGTTCAAAATCAAGTGAAGCCAAGGAACTTCATGGAtcttagaaagaagataaagcATATAATCGAAGAAAGCAAAAGTGAAAAGCGTCGCATTACAATGGATGCTATAGTCGACAAAATTCCTGGCGGAAATAGGTTTTCTGAAAATGTAAGGAAGTTGATTAACCATAGTCAATCCAAAGGTCACAATAGAGAAGGAAAAGAGAATGGAACTACAAGTGGTTATTATGGTAATCGTCTTTCTAAGTCTTACTCGAGAAATAAGAGTCAGTTATCGAGTATGAGGACTTCATCTCTAAAAGAATCGGCTGATCGATATTCTCAGCTTTACGACACTTGTTTTCAACAAGAAACAGCTAACAATAATGAAGTTAAGAATCCTAAAACTGAGAgcttaaaattgaaaacagaagAGAAAAGTTCGATATTAAAGACACCGAAATCCTttcaaaggtttctctcattaCCTAATCTAAAATCTCAACACAATCAAAGTGAGGAATCTTCTCTGCAATCATCTCCTCAGAATTCAATTAGAAAAACTGAAGACAGAACcataaacaaaaatgatgatTTCTCAAAGAGTCAAATTCTTTCACCTACACTTTCTGATCATACAAATGAAGAAAGCATTTTGAATGATGAACAAAAACAAGATCATGTTAAAAGTGCTCcagaatcagaatcagaagCAGAAGCAGGATTAGATGTTAATGATAAGATAAAGTCAAATAAGAGTATAGTAATTGATGGTTTAGGAACCTTGAAAGGAAGTGAAAGTGCTGCTAGCATTGGATCTACTATGTTGGTTGAAGCAAACTCAACTTTTTCTTCTGAAGCTAGCTTCTTAGATTGTACATTTGAGTTGGAAAACTTAAATGGATTGGAAGATCAAGAATTAAAGCCAGTGGCAgctgatgatgaattgaataatatatttgagCAACAAGATGCTAAAGATGAAAATTTTCTGAAATTTGGATATGAAATTCCAAGGATGGAAATTGATACAAATAATGAAGCTGCatataattatgtaaaaaaagtTTTAGAACTCTCAGGCTTCACCAGCAACGAATCTCTTGGAACATGGTATTCAGATAATCAACCACTTGATCCATCAGTTTATGAAGAATTAGAAGGATGTTTACTTCTTGATCCTGATTGTTCTGGTAATTGTGATGAAGGTGGACATTGCAATCATCTTCTTCTATTTGATATAATCAATGAAGGATTATTGGAGATTTTTGGAAGATCATATAATTATTATCCTAGGCCTTTATCTTCACTATCTTATGTTCATCCATTGCCAAATGGAGGAGATAATGTTTTGCATAAAGTATGGAAACTTATTAGTTGGTATCTTAATTCAGCTCCTAAAGAGGCTTATACATCATTGGATTACTATGTTGCTAAAGATTTAGCAAAATATGATGGATGGATGAATCTTcaatttgattctgaatgtgcTGGGCTTGAGATAgatgatttgatttttgatgatCTCTTGGAGGAAATTATCTACACTTAA 2586 0.321 MRKRIRDNKEVGVSNGMHCHHTHPGRVWGILHVIKYHHWRHVKRRITPRRCNGGSHNASKSNVEENKLVNSTPHTKHSIKSRLKSLLHEDIYKKKGRHKRSSTCPAKPQLTPPESVHNLEVDPLSEMLLTVENPEPVIETFQNHLASGTLDVLSPVFSGSNKSINSNNTNSDKCVECGALFSSEPLENHDDKIHHKHHNISISEGLPEDKLMNAKIFTTDASPHLFKDFLDALEVINTNKDFLMKYINDPGSPLPFEIHTQQQSPNFKPRRAKSISLPVYGSSSGTKDSEHTVSELIDTKGKIQSEIQNVGDLHKPSTSSSSSHKVDEVLNSDQESVERENKNISSDSSHSQVQNQVKPRNFMDLRKKIKHIIEESKSEKRRITMDAIVDKIPGGNRFSENVRKLINHSQSKGHNREGKENGTTSGYYGNRLSKSYSRNKSQLSSMRTSSLKESADRYSQLYDTCFQQETANNNEVKNPKTESLKLKTEEKSSILKTPKSFQRFLSLPNLKSQHNQSEESSLQSSPQNSIRKTEDRTINKNDDFSKSQILSPTLSDHTNEESILNDEQKQDHVKSAPESESEAEAGLDVNDKIKSNKSIVIDGLGTLKGSESAASIGSTMLVEANSTFSSEASFLDCTFELENLNGLEDQELKPVAADDELNNIFEQQDAKDENFLKFGYEIPRMEIDTNNEAAYNYVKKVLELSGFTSNESLGTWYSDNQPLDPSVYEELEGCLLLDPDCSGNCDEGGHCNHLLLFDIINEGLLEIFGRSYNYYPRPLSSLSYVHPLPNGGDNVLHKVWKLISWYLNSAPKEAYTSLDYYVAKDLAKYDGWMNLQFDSECAGLEIDDLIFDDLLEEIIYT 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01616 861 PANTHER PROTEIN TRM32 13 861 IPR044257 -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 94 116 - -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 420 452 - -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 560 589 - -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 511 589 - -
Tsu01g01616 861 Pfam Protein of unknown function (DUF3741) 210 252 IPR022212 -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 408 452 - -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 328 345 - -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 1 16 - -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 312 327 - -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 312 358 - -
Tsu01g01616 861 PANTHER TRM32-LIKE PROTEIN (DUF3741) 13 861 - -
Tsu01g01616 861 Pfam Domain of unknown function (DUF4378) 695 857 IPR025486 -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 1 22 - -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 543 559 - -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 470 493 - -
Tsu01g01616 861 MobiDBLite consensus disorder prediction 511 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01616 Tsu-Chr1 15876508 15880973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01616 23 851 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 30.628 2.71e-95 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01616 - - gmx:100807303 876.7