Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01604 ATGGAGGTTTTTACTAAATGGATTCTCAATGTTTGTTTCATGTTGTTGCtttttgtgttgtttgttgAAGAACAAACCATGGCTTCACCACAGATCTCTCAGCTTAGAAATGTTGAAATTGAGACACACAGGTTACCAAGCTTTAACGATTCATCAATGGCGGCAAGGGAAAAAGAAGCTGAGAAATTGAATGAGCGTGCTGCCGTGGCTAATCCGCAAGAGGTGGTTTCTATGGTTGAGACGCACATTCAGAACAGCACTGAAAGAAGGAATCTCGGATTTTTCTCCTGTGGAACTGGTAACCCTATTGATGATTGCTGGCGTTGCGACGCAAATTGGCAACGCAACAGGAAGCGTCTAGCAGACTGTGGTATTGGTTTCGGTAGAAACGCTATTGGTGGTCGTGATGGAAAGTTCTATGTTGTCACTGACTCAAGAGACGATGACCCTGTTAACCCAAGACCAGGAACTTTGCGTCACGCTGTCATCCAAGATAGACCACTTTGGATTGTGTTCAAGAGAGACATGGTTATTCAGTTGAAACAAGAGCTTATTGTGAACAGTTTCAAGACAATTGATGGAAGAGGAACTAATGTTCATATTGCTAATGGAGGATGCATTACAATTCAGTATGTTACTAATGTTATCGTTCATGGTCTTCATATTCATGATTGTGTACCAACTGGTAATGCTATGGTGAGAAGCTCGGAAACACATTTTGGTTGGAGAACTATGGCTGATGGTGATGCTATTTCTATCTTTGGTTCAAGTCATATTTGGGTTGATCATAATTCTTTATCTCATTGCGCTGATGGTCTTGTTGATGCTGTCATGGGATCAACTGCTATAACCATTTCTAACAACCACTTCACTCACCACAATGAGGTGATTCTGTTGGGACACAGTGACTCCTACACAAGAGACAAACAAATGCAAGTGACCATAGCTTATAACCATTTTGGAGAAGGACTTATTCAGAGAATGCCACGTTGTAGACATGGATATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTGAACCCACAATCAACAGCCAGGGTAACAGATACAATGCTCCTACTAACCCTTTTGCCAAAGAGGTAACTAAGAGAGTTGAAACACCAGAAGGCCAATGGAAAGGATGGAATTGGAGATCAGAGGGAGATTTATATCTCAATGGTGCATACTTCACAGCATCCGGTGCCGGAGCTTCAGCTAGCTATGCAAGAGCCTCAAGTTTAGGAGCAAAATCTTCGGCTATGGTCGGAACTATAACATCAAATGCTGGTGCACTAGGTTGCAAAAGAGGTCGTCAGTGCTAA 1350 0.4193 MEVFTKWILNVCFMLLLFVLFVEEQTMASPQISQLRNVEIETHRLPSFNDSSMAAREKEAEKLNERAAVANPQEVVSMVETHIQNSTERRNLGFFSCGTGNPIDDCWRCDANWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDSRDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGTNVHIANGGCITIQYVTNVIVHGLHIHDCVPTGNAMVRSSETHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYNAPTNPFAKEVTKRVETPEGQWKGWNWRSEGDLYLNGAYFTASGAGASASYARASSLGAKSSAMVGTITSNAGALGCKRGRQC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01604 449 Pfam Pectate lyase 181 364 IPR002022 -
Tsu01g01604 449 PANTHER PECTATE LYASE 14 446 - -
Tsu01g01604 449 PANTHER PECTATE LYASE 18-RELATED 14 446 IPR045032 GO:0030570
Tsu01g01604 449 SUPERFAMILY Pectin lyase-like 75 443 IPR011050 -
Tsu01g01604 449 SMART amb_all 175 372 IPR002022 -
Tsu01g01604 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Tsu01g01604 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Tsu01g01604 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Tsu01g01604 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Tsu01g01604 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Tsu01g01604 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Tsu01g01604 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Tsu01g01604 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Tsu01g01604 449 Gene3D - 100 442 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01604 Tsu-Chr1 15660787 15666660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01604 39 449 Polysaccharide Lyase AT4G13710 78.125 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01604 K01728 - gmx:100808253 813.142