Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01599 ATGGAGGAGGATATGAAAATTGTTGATATTATTGATGTTCCTGATACCCCAGATAGACCAAATGCTGGAAACAATGCTAAAAAATGTGTAGGTAATCCCGAGAAGAGGGAGAGGGCTTTACCTGTTGCTGGTGAACGAAGTAACTGCAGCAACTATATAATAGTGTCTCCGACTCCGGATAAAATTTATCCATCTCAAAATGCTCCCATATTTAGGAGAGCCCAAGCTGAGAAAGTTTATGGACATGGGACATCACACTCTAATGGAGCTCAAAAGATGGAGAAAGGGAAAACTGTAAGCTCCAAGGTTCCTTCTAGGTCATCTCACCATgggcatttttcttttttcgatTTGACGGAAGAGAATGGGCAGTTCCAACAACCAAAACCAGTTTTCTCAGATTGTGGATCAAGAGATAACACAATTGAAGACAAGAAAGAAGTGAAAGCAAGTATTGGGAATTCTTCGTTACCCTTAATCACTGGTTCTTCTAATACATCCAGAAATGCCGTCACTGGAAAATATAAACCAGATAACGAAACATTTCAAATTCCTAAAACATTTATGGACCGTGGCAAGAGCATTGCTCGGTCAAATGATTCTCAATCTCAACTGAAAGTTGAAAATCGACTTCCTTTGCCTCCTCATGTTTCCACTGCAACAAGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCACATAATATCGCAACAAGGGAAAAACAATCAGCTGAACAGAGCAGCCCTCAAACCAATGATGTTGAACTGATCTGTGCTGGGCATTCAGTTTCTAGCAATACAATGTCTCCAATTAGTGTTGATGATATTGTTGCTGAAGAGAGAGGCGGTGGTAGAGTGAAAGGAAAGGGAGTGCTTATTCATCCTTCACATGGTGCTAGTGCTAGAACTATTCACACTGATAGCAGCAGCCCTGTGGTCAATTATGAAGAGGCCAGTGACAGCAGTAATAAACCAATAAATTCAGTTGGAAACTGGGAGAGACAAAGTGGTTGGAGAACTACACATAATGATGTGAATGGGCATCATTCAAGGAGAagttttaatgaaaaatttattcacaGACAGAATATGAACAGTATAGAAAGAAGTGACACTGGGAGCAGTCAAAATGGCAAGGATGTAGGTCTGTCAGCTGGACCTAGTACTATTACCGACTCACTGACTAAAAGGCAAAGGAAACGGGAATCATCTTCTAGAAATCCTAATGTAGCATCTCATGATTCTGAAACTATATTCGTCAGTTCATCTGGGGAACCATCAAGTTCATCCCGAAACCGTGTCTTTGATCCTAAATTAGTTGAGTTGTTATCCGGACCAAGTTTCACCAACGGACTGAGTGAAGGTTTAAATGACAATGACAACAATAGTTCGGTTGCTCGGGCAATGCAATTAGAAGCAGATGAGATGTTGGCACGTGAACTCCAAGAACAGATGTATAATGATGATTATTTTGAAGACAGTTGGATTGATGAACATATAGCACGGGAGCTGCAGGATGAAGCGGATTTTCTGCACACGTCTACTGCTAATAATCAGATACCTCATCCTTCATGGGCTCCGAGGGAAAATAGACAGCCCCGTTCACGACCGCATCAAAATCCTTCAAATAGGAGGAGAACTGCGCCTCAAGTTCCTCTCTCTAATAGAACGTCACAGTTGAGGAGTCGCATGATAACTCGATCGGCAAGGCCTACCACACCATctagaggaagaggaagaggacgAGGACGAGGAAGAGGAACACTCCCCCGGTTTCCTCTAGATATGGACCTAGACATGAGACTTGATATATTGGAAGCATTAGAAGATGCAGTAGGGGATTTTAATGATATGGGAATGGGAGATGACATCCTTAACGCTCATCGTGATTTCAATGAAGGTGATTATGAAATGTTATTGGCCCTTGATGACCAAAATCACCAGCATACTGGTGCATCTACCAATCTGATCAATAGCTTGCCACAGTCCACTGTCCAGAATGACAACTTCACAGAGGATTGTGCCGTATGTCTTGAGACCCCTGTCAGGGGAGACATTATTCGTCACCTTCCTTGTTTGCATAAATTTCACAAAGACTGTATTGATCCTTGGCTTAGTAGGAAAAGGTCGTGCCCGGTGTGCAAGTCATCTATCACCTAA 2172 0.4125 MEEDMKIVDIIDVPDTPDRPNAGNNAKKCVGNPEKRERALPVAGERSNCSNYIIVSPTPDKIYPSQNAPIFRRAQAEKVYGHGTSHSNGAQKMEKGKTVSSKVPSRSSHHGHFSFFDLTEENGQFQQPKPVFSDCGSRDNTIEDKKEVKASIGNSSLPLITGSSNTSRNAVTGKYKPDNETFQIPKTFMDRGKSIARSNDSQSQLKVENRLPLPPHVSTATRGRGHKRLVRNGCISPHNIATREKQSAEQSSPQTNDVELICAGHSVSSNTMSPISVDDIVAEERGGGRVKGKGVLIHPSHGASARTIHTDSSSPVVNYEEASDSSNKPINSVGNWERQSGWRTTHNDVNGHHSRRSFNEKFIHRQNMNSIERSDTGSSQNGKDVGLSAGPSTITDSLTKRQRKRESSSRNPNVASHDSETIFVSSSGEPSSSSRNRVFDPKLVELLSGPSFTNGLSEGLNDNDNNSSVARAMQLEADEMLARELQEQMYNDDYFEDSWIDEHIARELQDEADFLHTSTANNQIPHPSWAPRENRQPRSRPHQNPSNRRRTAPQVPLSNRTSQLRSRMITRSARPTTPSRGRGRGRGRGRGTLPRFPLDMDLDMRLDILEALEDAVGDFNDMGMGDDILNAHRDFNEGDYEMLLALDDQNHQHTGASTNLINSLPQSTVQNDNFTEDCAVCLETPVRGDIIRHLPCLHKFHKDCIDPWLSRKRSCPVCKSSIT 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01599 723 MobiDBLite consensus disorder prediction 12 43 - -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 348 368 - -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 300 436 - -
Tsu01g01599 723 CDD RING-H2_PA-TM-RING 677 719 - -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 546 577 - -
Tsu01g01599 723 Pfam Ring finger domain 677 719 IPR001841 -
Tsu01g01599 723 SMART ring_2 678 718 IPR001841 -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 369 397 - -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 82 108 - -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 159 178 - -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 82 113 - -
Tsu01g01599 723 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 533 721 - -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 519 596 - -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 305 347 - -
Tsu01g01599 723 PANTHER - 533 721 - -
Tsu01g01599 723 SUPERFAMILY RING/U-box 663 722 - -
Tsu01g01599 723 ProSiteProfiles Zinc finger RING-type profile. 678 719 IPR001841 -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 412 436 - -
Tsu01g01599 723 MobiDBLite consensus disorder prediction 159 176 - -
Tsu01g01599 723 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 723 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01599 Tsu-Chr1 15583852 15592128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01599 415 723 C3H Transcription Factor Family AT1G04790 43.072 2.79e-65 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01599 - - cam:101513161 848.58