Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01587 ATGGCAGTGGGCCCTCCGCACCACGTTGTTTCTTGTTCTCCGGCATCGCCGTTTTTGTGCGGTGATGTTTTCGCGTCAGATTTGGAACATTCTGTTACAAAGGCGATGGTTACCGCGGAGTTTCGCGTTCTATTTCATGGTGCATGTTTTGGTGCTCGAGGTGGTTATGACACATGTGGTATGTTTCCGGCGATGGTTTTGACACCGAGGTGTGCTTCCGACAGTGGTTATGTCCAAGGGTTTCATGTGAAGAAGGAGTTTCGTGCTCTAGCAGCAGTTCCGACGGTGTATTGTTATGTTGTTCACGGTGTGTTAGGAGGGGTCTGGTGCGACAATGGTGTTTTCGGTGTAAGATGTTTCTATTCTGCTTCGCTTAAGTTGTTTAGCTGGCTCTTGTCTCAACAAGTACACAAACGTGAAAAAGCTGGGATGGATGCCCTTGCTTCTGTGGATGACCTTTTGGATTTCTCATCTGACAtaggtgaggatgatgatgatgataaatcGAAGAAAGACATTCCTTCAGCTAAACCAAAATGCAGTGATCCACCGTCACTTCGTCCATTGGGCCTGGAGGATCCTAACCATTCATTTCCTGAGTATGCAGAAGAGGAGCTTGAATGGCTATCCAACAAAGATGCATTTCCGGCTGTTGAAACATTTGTCGACATATCCTGTATTCAAACGGATATGTCGAAGTATCAAAAGACAACACCAACGCTCGAGAACAGCACAAGCAGTAGCAACAACAGCAATAACAGTTCCAACAGCATTACCCTCTTAAGTGGCTACAATCAAATGAAGTTCCCTGTTCGTGCAAGGAGCAAGTCTCGTAGTAAGCCTCGCCTTGTTGACACCTTGAACCAGCAATTCCCGTGGAAACAACCGAGTAACAAAATTTCCAGAGAACAAGTGAGACAAACCTCAAACAACACTGGGAGGAAATGTCATCACTGTGGAGCTGATAGTACTCCACAATGGCGTGCAGGTCCCGATGGTCCGAAAACCCTTTGTAATGCATGTGGGGTTAGGTTTAAGTCTGGCCGACTTGTGCCTGAATACCGCCCTGCAAATAGCCCAACTTTTCGCCGTGACGTTCATTCTAATTCCCACAGGAAAGTACTGGAGATGAGGAGGCAGAAGGGAATGGGTTGA 1155 0.4597 MAVGPPHHVVSCSPASPFLCGDVFASDLEHSVTKAMVTAEFRVLFHGACFGARGGYDTCGMFPAMVLTPRCASDSGYVQGFHVKKEFRALAAVPTVYCYVVHGVLGGVWCDNGVFGVRCFYSASLKLFSWLLSQQVHKREKAGMDALASVDDLLDFSSDIGEDDDDDKSKKDIPSAKPKCSDPPSLRPLGLEDPNHSFPEYAEEELEWLSNKDAFPAVETFVDISCIQTDMSKYQKTTPTLENSTSSSNNSNNSSNSITLLSGYNQMKFPVRARSKSRSKPRLVDTLNQQFPWKQPSNKISREQVRQTSNNTGRKCHHCGADSTPQWRAGPDGPKTLCNACGVRFKSGRLVPEYRPANSPTFRRDVHSNSHRKVLEMRRQKGMG 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01587 384 Gene3D - 305 378 IPR013088 GO:0006355|GO:0008270
Tsu01g01587 384 PANTHER GATA TRANSCRIPTION FACTOR 1 149 381 - -
Tsu01g01587 384 MobiDBLite consensus disorder prediction 163 177 - -
Tsu01g01587 384 MobiDBLite consensus disorder prediction 159 194 - -
Tsu01g01587 384 PANTHER GATA TRANSCRIPTION FACTOR 149 381 - -
Tsu01g01587 384 Pfam GATA zinc finger 316 349 IPR000679 GO:0006355|GO:0043565
Tsu01g01587 384 ProSitePatterns GATA-type zinc finger domain. 316 341 IPR000679 GO:0006355|GO:0043565
Tsu01g01587 384 MobiDBLite consensus disorder prediction 237 261 - -
Tsu01g01587 384 ProSiteProfiles GATA-type zinc finger domain profile. 310 346 IPR000679 GO:0006355|GO:0043565
Tsu01g01587 384 CDD ZnF_GATA 315 364 IPR000679 GO:0006355|GO:0043565
Tsu01g01587 384 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 311 374 - -
Tsu01g01587 384 SMART GATA_3 310 360 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01587 Tsu-Chr1 15492803 15500294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01587 203 380 C2C2-Gata Transcription Factor Family AT3G24050 44.335 2.29e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu01g01587 GATA 3.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01587 - - gmx:100784527 296.589