Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01578 ATGGATGAATATTGTTGCACCGCACGCCCATATTTTACCTTGTTACCATCTTTCCCGTCTTTTTCTTCTACCTCTCTTCTTCACACACAAACTCTTTCATCCTCCGATATATATTTCAATATCCTAGTTGAATACACACATATCCTTGTTCCAACCGATGGAACTCAATCTATTGTAATTACTCGTCGTCACGCTCTTCGTGATGTCTCTATGGAACAACTGATGCAACAAACTACTTTTGTACCATTGTTTTCTAAAATTAATGTTCCAAAACATGCTTTTAGGTTGGTTTTTGATGAAATATTGCAATGTGCTAATCATATGGTTTATGAAGATGAAGAGGACCTGAATGTTTTTAATATTCGAGTTGATTTAGATGTTACGACGCCTCTTGAAGATGACAGTTGTGATGAAGGTGATTATAAAGATGAACAGAACAATGGTTTGATTGAGGATGAAGAGGAAatagaacaagaagaagatagTGATTTGGTTCCTCCTATTACAAGGGCTACGATGGGTGAAAGTTATGAAGGTTATTATACAGATGAAGAGGAAAtggaagttgaagaagaagaagataatgGGTTGGTTCCTGCTAGGGCTATTGAAGGTGAAAGTTATGAACTTGATCATCATGATGACAATTACGGCTATGATGGCAATGATGATTTGGATGAGGATGAAGAGGAAATGGaggttgaaggagaagaagaggatAATGAGGTGGTTCCTTCTATTACAAGGGCTAGTGAGGGTGAAGGTAATGAAGTTGATTATGAAGAAAGTTACGGGTACGAAGGCTATATATTAGGTTTGGAAGAGGATGAAGACAGTGAGTTGTTTTTTGCTACTACAAGGGCTGGTGAGGGTGAAAGTTATGAAGGTTATACAGATGAAGAGGAAatggaagatgaagaagaatataTTAGGTTTATTCCTGCGGCTAAGTCTTGTGTCGAGGAATTGGAGATGATACGAGTTGAAGAAGCGGCAAAATgtgttatttgttttgaagaTCTTAATGCTGGTGTCCGATTGCCGTGTTCGCACATTTTTCATGTGAACTGTATCCATGATTGGTTGGTGGTCGGAAACTCCTGCCCCTTGTGTAGATTCCAATTGCCTTCTGCAAACACTAGTGAATAA 1149 0.3525 MDEYCCTARPYFTLLPSFPSFSSTSLLHTQTLSSSDIYFNILVEYTHILVPTDGTQSIVITRRHALRDVSMEQLMQQTTFVPLFSKINVPKHAFRLVFDEILQCANHMVYEDEEDLNVFNIRVDLDVTTPLEDDSCDEGDYKDEQNNGLIEDEEEIEQEEDSDLVPPITRATMGESYEGYYTDEEEMEVEEEEDNGLVPARAIEGESYELDHHDDNYGYDGNDDLDEDEEEMEVEGEEEDNEVVPSITRASEGEGNEVDYEESYGYEGYILGLEEDEDSELFFATTRAGEGESYEGYTDEEEMEDEEEYIRFIPAAKSCVEELEMIRVEEAAKCVICFEDLNAGVRLPCSHIFHVNCIHDWLVVGNSCPLCRFQLPSANTSE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01578 382 Pfam Ring finger domain 333 372 IPR001841 -
Tsu01g01578 382 SUPERFAMILY RING/U-box 333 376 - -
Tsu01g01578 382 Coils Coil 222 242 - -
Tsu01g01578 382 Coils Coil 142 162 - -
Tsu01g01578 382 MobiDBLite consensus disorder prediction 220 241 - -
Tsu01g01578 382 ProSiteProfiles Zinc finger RING-type profile. 334 372 IPR001841 -
Tsu01g01578 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 136 379 - -
Tsu01g01578 382 MobiDBLite consensus disorder prediction 209 244 - -
Tsu01g01578 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 375 IPR013083 -
Tsu01g01578 382 SMART ring_2 334 371 IPR001841 -
Tsu01g01578 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CIP8-LIKE ISOFORM X1 136 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01578 Tsu-Chr1 15430707 15431855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01578 292 377 C3H Transcription Factor Family AT3G02340 38.000 2.29e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01578 - - mtr:MTR_3g031000 217.238