Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01577 ATGGATGAATGTTGGTGCAAGGCACGCCCATATTGTTCCTTGTTACCATCTTTCCCGTCTTATTCTTCTACCGTTCTTAACACACAAACTCTTTCATCCTCCGATATATATTTCAATATCCTAGTTGAATACACACATATCCTTGTTCCAACCGATGGAACTCAATCTATTGTAATTACTCGTCGTCACGCTCTTCGTGATGTCTCAATGGAACAACTGATGCAACAAACTACTTTTGTACCATTGTTTTCTAAAATTAATGTTCCAAAACATGCTTTTAGGTTGGTTTTTGATGAAATATTGCAATGCGCTAATCATATGGTTTATGAAGATGAAGAGGACCTGAATGTTTTTAATATTCGAGTTGATTTAGATGTTACGACGCCTCTTGAAGATGACAGTTGTGATGAAGGTGATTATAAAGATGAACAGAACAATGGTTTGATTGAGGATGAAGAGGAAatagaacaagaagaagatagTGATTTGGTTCCTGCTATTACAAGGGTTACGAAGGGTGAAAGTTATGAAGGTTATTATACAGATGAAGAGGAAAtggaagttgaagaagaagaagaagataatgGGTTGGTTCCTGCTAGGGCTATTGAAAGTGAAAGTCATGAACTTGATCATGATGACAATTACGGCTATGATGGCAATGATGATTTGGTTCCTCCTATTACAAGGGCTACAAAGGGTGAAAGTTATGAAGGTTATTATACAGATGAAGAGGAAAtggaagttgaagaagaagaagataatgGGTTGGTTCCTGCTAGGGCTATTGAAGGTGAAAGTTATGAACTTGATTATGAAGACAATTACGGCTATGATGGCAATGATGATTTGGATGAAGATGAGGATGAAGAGGAAATGGaggttgaaggagaagaagaggatAATGAGGTGGTTCCTTCTATTACAAGGGCTAGTGAGGGTGAAGGTAATGAAGTTGATTATGAAGAAAGTTACGGGTACGAAGGCTATATATTAGGTTTGGAAGAGGATGAAGAGGAAATGATCTTTGAAGAAGAGGATAATGAGGTGGTTCCTTCTATTACAAGGGCTAGTGAGGGTGAAGGGCTTGAAGTTGATTATGAAGAAAGTTACGGCAACGAAGGCTATATATTAGGtttggaagaagatgaagagcaAATGATCTTTGAAGAAGAATATAATAGGTTTATTCCTGCGGCTAAGTCTTGTGTCGAGGAATTGGAGATGATACGAGTTGAAGAAGCGGAAAAATgtgttatttgttttgaagaTCTTAATGCCGGTGTCCGATTGCCGTGTTCGCACATTTTTCATGCGAACTGTATCCATGATTGGTTGGTGGTCGGAAACTCCTGCCCCTTGTGTAGATTCCAATTGCCTTCTGTAAACACTAGTGAATAA 1401 0.349 MDECWCKARPYCSLLPSFPSYSSTVLNTQTLSSSDIYFNILVEYTHILVPTDGTQSIVITRRHALRDVSMEQLMQQTTFVPLFSKINVPKHAFRLVFDEILQCANHMVYEDEEDLNVFNIRVDLDVTTPLEDDSCDEGDYKDEQNNGLIEDEEEIEQEEDSDLVPAITRVTKGESYEGYYTDEEEMEVEEEEEDNGLVPARAIESESHELDHDDNYGYDGNDDLVPPITRATKGESYEGYYTDEEEMEVEEEEDNGLVPARAIEGESYELDYEDNYGYDGNDDLDEDEDEEEMEVEGEEEDNEVVPSITRASEGEGNEVDYEESYGYEGYILGLEEDEEEMIFEEEDNEVVPSITRASEGEGLEVDYEESYGNEGYILGLEEDEEQMIFEEEYNRFIPAAKSCVEELEMIRVEEAEKCVICFEDLNAGVRLPCSHIFHANCIHDWLVVGNSCPLCRFQLPSVNTSE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01577 466 Pfam Ring finger domain 417 456 IPR001841 -
Tsu01g01577 466 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 459 IPR013083 -
Tsu01g01577 466 SMART ring_2 418 455 IPR001841 -
Tsu01g01577 466 MobiDBLite consensus disorder prediction 269 302 - -
Tsu01g01577 466 PANTHER F6A14.12 PROTEIN-RELATED 245 460 - -
Tsu01g01577 466 Coils Coil 281 301 - -
Tsu01g01577 466 CDD RING-H2_PA-TM-RING 418 456 - -
Tsu01g01577 466 ProSiteProfiles Zinc finger RING-type profile. 418 456 IPR001841 -
Tsu01g01577 466 MobiDBLite consensus disorder prediction 210 305 - -
Tsu01g01577 466 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 245 460 - -
Tsu01g01577 466 Coils Coil 141 161 - -
Tsu01g01577 466 SUPERFAMILY RING/U-box 411 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01577 Tsu-Chr1 15415098 15416498 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01577 362 461 C3H Transcription Factor Family AT5G01980 38.053 3.18e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01577 - - mtr:MTR_3g031000 141.739