Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01568 ATGACTAACACTCTCAAGGAGTTCCCTGACTTTTTCAAAGTCTTCCTTACTGAAAAGCACACTGAAAGAATGCTTATTCCAATTGCTTTTGCGAAGCTAGTGCGTTTAAAAAGGAGGGTAATGAAGGATGTTATCCTCAGAGATCGTAGAGGAAGAGATTGGCATGTCAAAGTGCGTCCTATTGGCAGTAAGCTTTATTTTGATGATGGCTGGAAGCGATTCGGAGAAGATAATTCTCTAGAGGAGAATGACTtccttttttttacacatattgaaaataatgtatTCAAGTTCAAAATCTTTGAACTATCGTCAATGTGTGAAAAGATAAAGGTAATGGATGAGGAGGAAGAGAATAATATGATGGAAGATGAGGTGGAGGTGGAGGGGGATGATGATGACAACAACAAAGATGATGCTGATGATGAGGAggatgacgatgatgatgacgacgacGACGATGATGCTAGCGATGTTAATATGATGGCAAAGGAAGAAGTTGATGATGAAGGGGCGTACAAGGTATTTGGTAGAAGTGAACATCAACATTCTAGAACCTGCAAACACTGTAAGACTGGGAGCAATTCAGCAGCTccaaaatttgaagatgaaatcGATGTTGAAATGTATATTCAGCCGGGAAATCCAcaattctttgcaaaatatagtCCTTGGAGACCAAATGAATTGCATATTCCAACAAAAGTTATTGAGGATTTCAGTCTTTGCTTTCCAAAGCATATCACCCTTGTATGTTGCAACTGCAAGGATGTTCAAAGAAATGAAATTGCAGCTTATCATCACATCTTGCCACTAATGAGCACAAAACATATCCAAAAGAGAGGTAAAATAAGTACATGGAGAGATGGTCGTGTGACTGTGAAAGGGTGGGAAGGTTTTCGTAAAAAGAGCATGATAAGAGAAAATGATAGTTGCTTATGTGAAATTATGCTGCGTAAAGATGGAACAATCGAAATGTTAAGGGTACACGTTATTGGGAAGAATTGTGCTGCGTGA 1017 0.3579 MTNTLKEFPDFFKVFLTEKHTERMLIPIAFAKLVRLKRRVMKDVILRDRRGRDWHVKVRPIGSKLYFDDGWKRFGEDNSLEENDFLFFTHIENNVFKFKIFELSSMCEKIKVMDEEEENNMMEDEVEVEGDDDDNNKDDADDEEDDDDDDDDDDDASDVNMMAKEEVDDEGAYKVFGRSEHQHSRTCKHCKTGSNSAAPKFEDEIDVEMYIQPGNPQFFAKYSPWRPNELHIPTKVIEDFSLCFPKHITLVCCNCKDVQRNEIAAYHHILPLMSTKHIQKRGKISTWRDGRVTVKGWEGFRKKSMIRENDSCLCEIMLRKDGTIEMLRVHVIGKNCAA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01568 338 PANTHER B3 DOMAIN-CONTAINING 4 332 - -
Tsu01g01568 338 SMART B3_2 11 104 IPR003340 GO:0003677
Tsu01g01568 338 CDD B3_DNA 9 101 IPR003340 GO:0003677
Tsu01g01568 338 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 4 332 - -
Tsu01g01568 338 MobiDBLite consensus disorder prediction 117 157 - -
Tsu01g01568 338 SUPERFAMILY DNA-binding pseudobarrel domain 8 103 IPR015300 -
Tsu01g01568 338 Pfam B3 DNA binding domain 11 102 IPR003340 GO:0003677
Tsu01g01568 338 SUPERFAMILY DNA-binding pseudobarrel domain 211 335 IPR015300 -
Tsu01g01568 338 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Tsu01g01568 338 MobiDBLite consensus disorder prediction 116 157 - -
Tsu01g01568 338 Gene3D - 3 107 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01568 Tsu-Chr1 15309911 15347805 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01568 8 338 B3 DNA Binding Superfamily AT3G06160 23.167 3.11e-20 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01568 B3 1.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01568 - - mtr:MTR_1g046320 375.17