Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01563 ATGACAAACACTGCTAAGGAGTTCCCTGACTTTTTCAAAGTCTTCCTCAAACAACAGCACTATGATAGAATGCTTATCCCAGTTGCTTTTGTGAAGCTAATGCATTCAAAAAGGAAGGTAATTAAGGATTTTATCCTCAGAAATCATAGAGGAAGAGATTGGCATGTCAAAGCGCGTCCTATTGGCGGCAAGCTTTATTTTGACGATGGTTGGAAGCGATTCAGAGAAGAAAATTCTCTAGAGGAAAATGACTtccttttttttacacatattgaaaataatgtattcaaattcaaaatacttGAACTCTCAACAATGTGTGATAAGGAAAAGGTAATAGATGACGAAGAAAACAATAATATGATGGAGAATCATGAaaatgatgatggtggtgataCTGCTGCtgctgatgatgatgatgatataatggtagaggaagatgaagatgaaaaagatgatgatgatgttgctgATGATGACGACGAAGACAATGATGAGTACAtaattaaagaagaagaagaagaagaagaagaagaggaggaggaggaggtgaATGAAGAAGTGTACAAGAAATTTAATAGAAGTGAACCTCAACATTGTAGAACCTGCAAAAATTGGGACATGGGAAGAAACTCTGCAGATTCAAAACTTGAAGATGATGAAATTAAAGCTGAAATATATGTTCAACCAGGAAATCCATACTTCATTGCAAAACCTCTTCATTACAGACCCAATGAATTGCACATtccacataatattattaagGATTTCTGTCTTTGCATCACAAAATATATCAACCTTGTATTTTGCCACTGCAAGGATGTTCAAAGCAATGAAATAGCATACTATCACAACATTCAGCCACAAATGAACGCAAATCATGctgaaaagagaggaaaagtaCGTAAATGGACAAACGGCCGAGTCTTGGTGCTAGGGTGGACAGAATTTTGTAAAAAGAGTAAGATCAGAGAAAATGATACATGCTTGTGTGAAATTGTGTTGCGTGGCAACGATGAAGCAATAGAAATGATAAGGGTGCACGTCGTTAGGAACGAATGA 1062 0.2966 MTNTAKEFPDFFKVFLKQQHYDRMLIPVAFVKLMHSKRKVIKDFILRNHRGRDWHVKARPIGGKLYFDDGWKRFREENSLEENDFLFFTHIENNVFKFKILELSTMCDKEKVIDDEENNNMMENHENDDGGDTAAADDDDDIMVEEDEDEKDDDDVADDDDEDNDEYIIKEEEEEEEEEEEEEVNEEVYKKFNRSEPQHCRTCKNWDMGRNSADSKLEDDEIKAEIYVQPGNPYFIAKPLHYRPNELHIPHNIIKDFCLCITKYINLVFCHCKDVQSNEIAYYHNIQPQMNANHAEKRGKVRKWTNGRVLVLGWTEFCKKSKIRENDTCLCEIVLRGNDEAIEMIRVHVVRNE 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01563 353 CDD B3_DNA 9 101 IPR003340 GO:0003677
Tsu01g01563 353 SMART B3_2 11 104 IPR003340 GO:0003677
Tsu01g01563 353 MobiDBLite consensus disorder prediction 170 185 - -
Tsu01g01563 353 Gene3D - 176 353 IPR015300 -
Tsu01g01563 353 SUPERFAMILY DNA-binding pseudobarrel domain 229 338 IPR015300 -
Tsu01g01563 353 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Tsu01g01563 353 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Tsu01g01563 353 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Tsu01g01563 353 Coils Coil 164 191 - -
Tsu01g01563 353 MobiDBLite consensus disorder prediction 170 189 - -
Tsu01g01563 353 Gene3D - 2 107 IPR015300 -
Tsu01g01563 353 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 2 351 - -
Tsu01g01563 353 PANTHER B3 DOMAIN-CONTAINING 2 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01563 Tsu-Chr1 15257657 15260454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01563 8 352 B3 DNA Binding Superfamily AT3G06160 22.507 1.03e-19 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g01563 B3 4.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01563 - - mtr:MTR_1g046320 251.521