Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01554 aTGTCTGAGAAAATTTTCATCGGAAATGATGACAAAAAAAACCTCAAGCGCAAAAGGGAGGAGTTAGAGCCAAAACATGAGAAATCAAAGGTGATGCAACAAACCTCTGAATCCGATGTTAAGGATTTACTTACGCTGAGGCTTGGCATTCACACCAAGTCCACTATCAAATCTTTGGAGATCGGTGAACATTCGAGTTCATACCAAAACGTTGTTGAGTCTGTATCTCAAAATGCTACTAATGAACCTTTACCCCAAAATACTACCAATGAACCTTTACATAAGCAAGAAGTGAGGGAACtcatttgtcattattgtgacAAGAAATTCTCCACGTCTCAATCACTTGGAGGGTACCAAAACGCTCACCAGCATGAGCGTGCCtccaaaaaaatggaaaaacaaaGGAGAAAGGCTGAGGAAATGAATTCAACTCTAAGGTTTAGCTATAGTTATAATCAACTATACCCTTATCAATTTCCAAGCCCTATTCACTATCAAGGGTATTCATATTTACATCGTGCTAATTTGAACTATCCAATTAGCTCGCATAATAACAATGTCATGCCTTCTTGGACCATTGGTTCTCCTTCTAATAGCTATGGAGGGTTgcatatttcaaattcatccccCACAACACCCCAATTTCCCACGCAAATGCCAAATTCATCCTTCACAATACCGCAATTTGGGATGACTAATTTTAGGAGTGGAGGTCAAAATGTTGCATTGCCGATTCCGCAAAGGTTAAACACCCTAGGTTTGAGACAATTTGCTCAAGCTAATCAAACCCCTTCAATTGCTAAGGGTACAGAAAGAAATTTCAATGCTCAATTTCGTTCTCAAACTCTTCCATTATTGTCACATGCCAATCTTATTCAAATAAATCACGTTTCTTCATCACCAACTCAAACAACCTCGGAGGCACTGAATTTGAATCTCACCCTTTAA 951 0.3691 MSEKIFIGNDDKKNLKRKREELEPKHEKSKVMQQTSESDVKDLLTLRLGIHTKSTIKSLEIGEHSSSYQNVVESVSQNATNEPLPQNTTNEPLHKQEVRELICHYCDKKFSTSQSLGGYQNAHQHERASKKMEKQRRKAEEMNSTLRFSYSYNQLYPYQFPSPIHYQGYSYLHRANLNYPISSHNNNVMPSWTIGSPSNSYGGLHISNSSPTTPQFPTQMPNSSFTIPQFGMTNFRSGGQNVALPIPQRLNTLGLRQFAQANQTPSIAKGTERNFNAQFRSQTLPLLSHANLIQINHVSSSPTQTTSEALNLNLTL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01554 316 MobiDBLite consensus disorder prediction 1 35 - -
Tsu01g01554 316 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 258 IPR044246 GO:0009788
Tsu01g01554 316 MobiDBLite consensus disorder prediction 1 36 - -
Tsu01g01554 316 MobiDBLite consensus disorder prediction 114 140 - -
Tsu01g01554 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Tsu01g01554 316 MobiDBLite consensus disorder prediction 124 140 - -
Tsu01g01554 316 Coils Coil 122 145 - -
Tsu01g01554 316 SUPERFAMILY beta-beta-alpha zinc fingers 93 143 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01554 Tsu-Chr1 15149226 15150176 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01554 66 204 C2H2 Transcription Factor Family AT5G05120 29.167 1.41e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01554 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01554 - - cam:101490368 240.35