Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01545 ATGGCTAGAAAGAAGGTGAAGCTTGCATACATAACCTGTAACTCGAAGAGGAGGGAAACATTCAGAAAGAGGAAAAGTGGTATTATGAAGAAGGTTAGCGAACTTAGCACCCTTTGTGGGATAGAAGCCTGTGTCATAATCTATGATCAAAACAATCCTCAAGCATATGTTTGGCCATCAGATTCAGGAGTCAAAAGTGTGTTATCAAGGTTTGGGAGTTTGTCAGAATTTGAACGAAACAAAAAGATGGTGGATCAAGAGACATTCTTAAGGGAAAGCATAGAGAAACGCCGTGACcaattgaagaaacaaagggAGGGAACTAGAAAGAAGGAATTTGccaatataattaataattacatTCAAAATGGAGAATGTAATAGCAATTTAATGAGCAAAGATGATCTCAATGATTTCTCATCTTTTATTGATGAGAATTATCTGAAGGAAGTCAATCaaaagatgaaacaaatgcAAATTGAAGCCCAAGATCCTTAG 498 0.3333 MARKKVKLAYITCNSKRRETFRKRKSGIMKKVSELSTLCGIEACVIIYDQNNPQAYVWPSDSGVKSVLSRFGSLSEFERNKKMVDQETFLRESIEKRRDQLKKQREGTRKKEFANIINNYIQNGECNSNLMSKDDLNDFSSFIDENYLKEVNQKMKQMQIEAQDP 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01545 165 Coils Coil 91 111 - -
Tsu01g01545 165 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Tsu01g01545 165 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Tsu01g01545 165 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Tsu01g01545 165 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu01g01545 165 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 159 - -
Tsu01g01545 165 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu01g01545 165 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu01g01545 165 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu01g01545 165 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu01g01545 165 PANTHER MADS BOX PROTEIN 2 159 - -
Tsu01g01545 165 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01545 Tsu-Chr1 15090608 15091207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01545 1 156 Type I MADS-box Gene Family AT5G48670 49.367 4.36e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g01545 SRF-TF 2.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01545 - - cam:101496969 221.861