Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01521 ATGTCGCTGCCGGAATGCTCAGTGGAGCAACTAACACAGTTCATCGGCCCAAACGCAACAAACGCAGAAGCTGCTGCTAAGTTCATCTGCAGCCAGTTCTCCGCGGTGGGAAATAAGTTCGTAGACACACAATTCGCTGTAGACAACACATACCTTCTATTTTCAGCTTATCTTGTTTTCTCTATGCAACTTGGTTTTGCTATGCTCTGTGCTGGTTCAGTTCGAGCCAAAAACACCATGAACATCATGCTCACAAACGTTCTTGACGCCGCCGCCGGTGGTCTTTTCTACTATCTCTTCGGTTTCGCCTTCGCCTTCGGCGGACCGTCCAACGGTTTCATCGGAAAACATTTCTTCGGTCTTAGAGACGTTCCGACGGAAGCTTTTGATTACAGCTATTTTCTCTATCAATGGGCTTTCGCCATAGCAGCTGCTGGCATCACCAGCGGCTCAATCGCGGAACGAACTCAGTTCGTTGCCTATCTTATTTACTCTTCTTTTCTCACGGGGTTTGTTTACCCTGTGGTTTCTCATTGGTTTTGGTCCAGTGATGGTTGGGCTAGCGCAACCAACACTGGAAACCTTTTGTTCAGCACAGGAGTCATTGATTTTGCTGGCTCCGGTGTTGTTCATATGGTTGGTGGTATTGCTGGTCTCTGGGGAGCACTGATTGAAGGTCCACGAATAGGACGGTTCGATCATTCTGGTCGAGCCGTAGCTCTTCGCGGACATAGTGCTTCCCTTGTTGTTCTTGGTACCTTCATGCTTTGGTTTGGTTGGTATGGTTTCAACCCCGGTTCCTTCACCAAGATTCTTAGTCCTTATAACTCAgGTAATTACTATGGACAGTGGAGTGCGGTGGGTAGGACGGCGGTGACAACGACGTTAGCGGGATGCACGGCGGCGCTAACAACACTTTTTGGGAAAAGAATTCTCTCCGGTCACTGGAACGTTACCGACGTATGTAACGGTTTATTAGGCGGTTTCGCCGCAATAACCGCCGGGTGCTCCGTCGTGGAACCATGGGCAGCAATAGTTTGTGGCTTTATGGCAGCGATTGTTTTGATCGCGTGTAACATACTCGCGGAAAAGGTACGTTACGATGATCCATTGGAAGCAGCTCAACTACACGGAGGATGTGGCGCGTGGGGTATAATATTCACAGCTTTGTTTGCAAAAGAAGAGTATGTGAACCAAGTTTATCCGGGTAAACCGGGTCGACCCTATGGATTATTTATGGGTGGTGGAGGGAAGTTATTAGGGGCACATGTGATTCAAATTTTGGTTATTATTGGTTGGGTTAGTGCAACCATGGGtcctttgttttttattctgaATAAAATGAAGTTGTTAAGGATTTCagctgaagatgaacttgcggGTATGGATATGACCCGACATGGTGGGTTTGCTTATGCTTATGAAGATGAGTCACATAAAAATGGGATTCAATTGAGGAAAATTGAACATAACTCTTCTTCAACTCCAACTCCAACTCCCACCACAGATTCATGA 1515 0.4587 MSLPECSVEQLTQFIGPNATNAEAAAKFICSQFSAVGNKFVDTQFAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGGPSNGFIGKHFFGLRDVPTEAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSSDGWASATNTGNLLFSTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHSGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSPYNSGNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFMAAIVLIACNILAEKVRYDDPLEAAQLHGGCGAWGIIFTALFAKEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFILNKMKLLRISAEDELAGMDMTRHGGFAYAYEDESHKNGIQLRKIEHNSSSTPTPTPTTDS 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01521 504 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 5 493 - -
Tsu01g01521 504 Gene3D Ammonium transporter AmtB like domains 29 492 IPR029020 -
Tsu01g01521 504 TIGRFAM amt: ammonium transporter 48 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tsu01g01521 504 PANTHER AMMONIUM TRANSPORTER 5 493 - -
Tsu01g01521 504 SUPERFAMILY Ammonium transporter 47 453 - -
Tsu01g01521 504 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Tsu01g01521 504 Pfam Ammonium Transporter Family 51 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01521 Tsu-Chr1 14706195 14708802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01521 5 500 Inorganic Solute Cotransporters AT4G13510 81.710 0.0 832
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01521 K03320 - egt:105950262 840.876