Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01519 ATGGCTACTGCTGCTGCAGGCATAGCATCATTGTTTTCATCTTCCATCAACACTGTCAAATGTCTTCGTTCCAAAAACTGCATGTTTCCAGTATCTTCTATGTCACAATCATTTTATTCTTACTCACTTGAACCTTTATCCATTGGTACAACAATCTCATCACATAAGTTATGGATGCCTAGAATTTCTGCTGCTGTTGCACAGGAAGAAGCTATTGTGTCTGCTGCTGAAGAAGAGGCTGTGGTGGAGGAAGAGAAAGAAGGACAAGAAGTAGTGAAGGAGAGTGCAGGAGAAATTGTTGATACTAGGACTAAGCtttattttggtaatttacCTTATGGTGTTGATAGTGCACAACTTGCAGGGTTAATTGAAGATTATGGTAGTGCAGAACTAATTGAGGTTCTTTATGATAGGGACACTGGGAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTCGTGTTGAAGATTGCAATGCAGTGATCAAAAATCTTGATGGAAAAGAGTTCATGGGACGAACCTTGCGTGTGAACTTCTCGGACAAACCGAAACCAAAAGAACCATTGTACCCTGAAACCGAGTACAAACTTTTTGTTGGGAACTTGTCTTGGAATGTAACTTCTGAGATTCTTACACAAGCCTTTCAAGAACATGGAACTGTGGTTGGAGCTAGGGTGTTATATGATGGCGAAACTGGAAGATCCCGTGGCTATGGCTTTGTTTCGTATGCCAATAAATCAGAAATGGAAGCTGCCCTTACTGTCATGGATAATGTGGAACTAGAAGGACGAACATTGCGTGTAAGCTTGGCTCAAGGAAAACGTTCAGAAGGTCGATAG 840 0.4083 MATAAAGIASLFSSSINTVKCLRSKNCMFPVSSMSQSFYSYSLEPLSIGTTISSHKLWMPRISAAVAQEEAIVSAAEEEAVVEEEKEGQEVVKESAGEIVDTRTKLYFGNLPYGVDSAQLAGLIEDYGSAELIEVLYDRDTGKSRGFAFVTMSRVEDCNAVIKNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLSWNVTSEILTQAFQEHGTVVGARVLYDGETGRSRGYGFVSYANKSEMEAALTVMDNVELEGRTLRVSLAQGKRSEGR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01519 279 SUPERFAMILY RNA-binding domain, RBD 191 275 IPR035979 GO:0003676
Tsu01g01519 279 PANTHER OS02G0815200 PROTEIN 6 276 - -
Tsu01g01519 279 PANTHER OS02G0815200 PROTEIN 6 276 - -
Tsu01g01519 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Tsu01g01519 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 176 IPR000504 GO:0003723
Tsu01g01519 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 267 IPR000504 GO:0003723
Tsu01g01519 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
Tsu01g01519 279 Coils Coil 66 86 - -
Tsu01g01519 279 Gene3D - 185 279 IPR012677 -
Tsu01g01519 279 SMART rrm1_1 105 178 IPR000504 GO:0003723
Tsu01g01519 279 SMART rrm1_1 196 269 IPR000504 GO:0003723
Tsu01g01519 279 SUPERFAMILY RNA-binding domain, RBD 98 187 IPR035979 GO:0003676
Tsu01g01519 279 Gene3D - 63 184 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01519 Tsu-Chr1 14690456 14693359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01519 104 274 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 4.83e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01519 - - gmx:100820203 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01519 01 14690456 14693359 Tsu01g01519 01 14690456 14693359 ECH
Tsu07g04110 07 46927563 46929922 Tsu01g01519 01 14690456 14693359 PCT