Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01514 ATGGCAAATTGCTGTGCAAATCCATGGGGTGTGTTCAAGAAACAAAAACGAAAGGAAAATCTCGATGAAGACTGGCCTGAGATAATAAACAAGACCAATAAATTGGTGGTGTTAAGAGAACCCACGGGCCGAGAGATTGGGCTACGATACGAATTAGGAATGGAATTAGGGAGAGGTGAATTAGGAATAACATACCTTTGCAAAGACAAACAAACGGGAGAAGAACTTGCTTGTAAGTCCATTTCAAAGAATAAGCTTAAAACTGCGATTGATATTGAAAATTTGAGAAGACAAGTTCAAATCATGTGGCATTTACCGATACATCCTAACATTGTTTCGTTGAAGTATACTTATGAAGACGAAGATTACGTTCATCTTGTTTCCGAACTCTGTGAAGGTGGTCGTCACCTTCTCCATCGCATCGTCTCTGGAGGATACTACACCGAACGCTCTGCAGCTTCTGTCATTGAAACCGTCGTCCAAGTTGTTCAGATGTGCCACAAACATGGTGTGATGCATCGGAATCTCAAACTCGAAAACTTTTTGTTTGCAGACAAGACGGAAACAGGACCTTTGAAAGTTGCTGACTTTCATTTGTCAATTTTCTTTCAACCAGGTGAAAGATTGAATCAGATAGTTGGAAACCTATATTACATGGCCCCTGAAGTATTGAAGAGAAGTTATGGCCCTGAAATTGATATCTGGAGTGCTGGAGTCATTCTTTACATCTTACTTTGTGGTGTCCCTCCATTTTGGGCCgAAACTGAGCAGGGAATTACTCAAGCAATTATAGAATCTGTTATTGACTTTAAAAGGGAGCCATGGCCAAATGTTTCTCCTGGCGCAAAAAACCTTGTTAAAAAGATGCTTCATCCTGACCCGAAGCTCCGGCTTTCTGCAGAGCAAGTGTTAGATCATTCATGGTTGACCAAGCATGTTAAGGAGAAATTCGATAAAGAAAAAGACATTGTTATGAATATGCTTACGGCTCATGATGTGTTGGGTGATCCATGGTTGCAGAATCCCAATACGGCTCCTAATGTTTCATTGGGAGAAACAGTCAGAAGAAAGCTCTTGCAATTTTCTGTAATAAACCAGCTTACGAAAACAACACCAAGGGTGATTGCACAACATTTGTATGATGAAGAATTCTGGGTGATGGATACAGGAATTAAAGGCTTCGTTAACCACGATGAAGTACAACGAAGGTTGTATAGGCTAGGCCAACAAAATCCTGATGTAGATGTGCAAAGACTTGTTGACGCTTTTGATGGAGACAGAGGTGGTGGTTACCTAGATTATAGAAAGTTTTTAGACATATCTGTTCATCTGAGAAAGAGATCCCATGAAGAACATGTCGATAGagcatttcaattttttgatgaaaaacaaTCTGGCTAtattgaacttgagaagttACGTATGGACTTAGCTGAAACTGATGAGAGTGACACAATGAGTAAAGAAGTCATTACTGCAATTATGCAAGATGTGGCCACAAATAAGGATGGAAGAATTAGTTACGAGGAAATTACCAATCGGAGTTTGAAACTTATGAAGGAGTGGTTACCAGAATTGATCAATAAGGATAGATATGACTTTACTAAATGA 1611 0.388 MANCCANPWGVFKKQKRKENLDEDWPEIINKTNKLVVLREPTGREIGLRYELGMELGRGELGITYLCKDKQTGEELACKSISKNKLKTAIDIENLRRQVQIMWHLPIHPNIVSLKYTYEDEDYVHLVSELCEGGRHLLHRIVSGGYYTERSAASVIETVVQVVQMCHKHGVMHRNLKLENFLFADKTETGPLKVADFHLSIFFQPGERLNQIVGNLYYMAPEVLKRSYGPEIDIWSAGVILYILLCGVPPFWAETEQGITQAIIESVIDFKREPWPNVSPGAKNLVKKMLHPDPKLRLSAEQVLDHSWLTKHVKEKFDKEKDIVMNMLTAHDVLGDPWLQNPNTAPNVSLGETVRRKLLQFSVINQLTKTTPRVIAQHLYDEEFWVMDTGIKGFVNHDEVQRRLYRLGQQNPDVDVQRLVDAFDGDRGGGYLDYRKFLDISVHLRKRSHEEHVDRAFQFFDEKQSGYIELEKLRMDLAETDESDTMSKEVITAIMQDVATNKDGRISYEEITNRSLKLMKEWLPELINKDRYDFTK 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01514 536 Pfam Protein kinase domain 50 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01514 536 Gene3D - 330 515 - -
Tsu01g01514 536 ProSiteProfiles EF-hand calcium-binding domain profile. 486 521 IPR002048 GO:0005509
Tsu01g01514 536 CDD STKc_CAMK 49 308 - -
Tsu01g01514 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 312 - -
Tsu01g01514 536 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509
Tsu01g01514 536 SUPERFAMILY Protein kinase-like (PK-like) 49 310 IPR011009 -
Tsu01g01514 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 327 526 - -
Tsu01g01514 536 Pfam EF-hand domain pair 452 511 IPR002048 GO:0005509
Tsu01g01514 536 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 8 23 312 - -
Tsu01g01514 536 SUPERFAMILY EF-hand 364 513 IPR011992 -
Tsu01g01514 536 Gene3D Phosphorylase Kinase; domain 1 45 133 - -
Tsu01g01514 536 ProSiteProfiles Protein kinase domain profile. 50 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01514 536 Gene3D Transferase(Phosphotransferase) domain 1 134 329 - -
Tsu01g01514 536 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 8 327 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01514 Tsu-Chr1 14663079 14670822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01514 1 512 EF-hand Containing Proteins AT5G19450 56.926 0.0 585
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu01g01514 Pkinase 8.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01514 K13412 - gmx:100815320 591.652