Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01509 ATGGCAACTCAAATGAGCAAAAAGCGAAAGTTCGTCGCAGACGGAGTTTTTTTCGCTGAATTGAATGAGGTTTTGACTAGAGAGCTTGCTGAAGATGGTTATTCTGGTGTTGAAGTTAGGGTTACACCGATGCGTACTGAAATCATCATCAGAGCTACTCGTACTCAAGCTGTTCTTGGTGAGAAGGGAAGGAGGATTAGAGAACTGACCTCAGTGGTACAGAAGAGGTTTAAGTTCCCCGAGAACAGCGTTGAACTTTATGCTGAGAAGGTTAACAACAGAGGACTTTGTGCCATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTCCTTGGTGGTCTTGCTGTCCGCAGGGCTTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGTGCCAAGGGTTGTGAGGTTATTGTCAGTGGAAAATTAAGAGCCCAGAGAGCCAAATCAATGAAATTCAAGGATGGTTACATGATTTCTTCTGGACAACCAGTCAAGGACTACATTGACTCTGCAGTGAGACATGTGCTCCTTAGACAGGGTGTTCTTGGTATTAAAGTTAAGATCATGCTTGATTGGGATCCTAAAGGTAAACAAGGTCCTAAAACTCCCCTCCCCGATATTGTCACCATTCACACTCCAAAGGAGGAGGAAGAGTACCGCCAGCCTGCTGCTGTTGTGGCAAATGATATTGAGGTCCCTGTCCCAGTACCTGttgtttga 720 0.45 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYRQPAAVVANDIEVPVPVPVV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01509 239 CDD 40S_S3_KH 15 95 - -
Tsu01g01509 239 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Tsu01g01509 239 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 2 231 - -
Tsu01g01509 239 Pfam KH domain 20 93 IPR004044 GO:0003723
Tsu01g01509 239 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Tsu01g01509 239 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Tsu01g01509 239 Gene3D - 1 91 IPR015946 -
Tsu01g01509 239 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Tsu01g01509 239 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Tsu01g01509 239 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Tsu01g01509 239 PANTHER RIBOSOMAL PROTEIN S3, PUTATIVE-RELATED 2 231 - -
Tsu01g01509 239 Gene3D - 93 231 IPR036419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01509 Tsu-Chr1 14597754 14600482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01509 1 233 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 88.412 4.41e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01509 K02985 - gmx:100795581 449.514