Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01506 ATGAATTGTTCCATTTCCGGTGAGGTTCCGGAAGAGCCCGTGGTGTCAAAAAGCTCCGGTCTTCTCTTTGAGAAGAGGTTAATCGAGAGACATATTGCGgATTATGGGAAGTGTCCAGTTACCGGAGAACCACTTACTTTGGATGACATTGTTCCGATCAAAACAGGCAAGATAGTGAAGCCTAGACCAGTGCAGGCAGCTAGCATCCCTGGCATGCTCGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAGCAATTGCATACAGCAAGGCAAGAGTTAAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGTGTGATTGCAAGACTTAAAAAGGAACGGGACGAAGCTAGGTCTATACTTGCACAGGCAGAAAGGCAGTTCCCTATTTCTACAACAAATGATGCAACAGCAAATGCTCCTGTTCATAGCAATGGGAAAAGAGCTGCTGATGATGAGGAGTTGGCACCTAATGCGAAGAAATTACATCCTGGAATTTCTTCTAGCATAATTTCTGAGCTAACAGAATGTAATGCTGCTCTTTCACAGCAGAGGAAAAAGCGACAGATTCCTGCGACTTTGGCTCCTATTGATGCTATAGAGACATATACCCAGATATCTAGTCATCccttaaacaaaacaaacagaCAAGGCATTATATCTCTTGATATCCTTTATTCTAAGGATTTGATTGCAACTGGAAATATTGATACAAATGCTGTTATTTTTGACCGTCCATCAGGACAAGTATTAGCTTCACTCAGTGGTCACTCTAAAAAGGTAACCAGCGTGAAGTTTGTAGGTCAGGGCGAATCTATCATAACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGAAAGGGTCAGATGATGGTCACTATACCTGCAGACAGATCTTGAAGGATCATTCGGCTGAGGTGCAAGCTGTCACTGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGATGGCACTTGGTGCTTTTATGAACTGTCTTCAGGGACTTGTCTGACTCAGGTTTCAGACCAATCCAAAGGCTATACATCTGCAGCTTTTCATCCCGACGGTCTTATTCTCGGAACTGGCACTACGGATTCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCTAAATTTGATGGACATGTGGGTCATGTGACTGCAATATCCTTTTCCGAGAATGGGTACTACCTTGCGACTGCAGCTCATGACGGTGTAAAGCTTTGGGATCTACGCAAGTTGAAAAACTTCCGGAATTTTGCCCCATATGACAAAGACACTCCAACAAACTCTGTGGAGTTTGACCACAGTGGATCCTACCTTGCAGTTGGAGGCTCGGATGTAAGAATATACCAAGTTGCAAATGTGAAATCTGAATGGAACTTGATCAAAACTTTTCCCGATTTATCTGGAACAGGTGctgtcttaattttttttgcctcATTCTTATCTTTTAATATTTCTCCGCTGCACACTTTGATTTCATGTTTATACAGTTGTTGCGATTCAACTTGA 1551 0.4165 MNCSISGEVPEEPVVSKSSGLLFEKRLIERHIADYGKCPVTGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSILAQAERQFPISTTNDATANAPVHSNGKRAADDEELAPNAKKLHPGISSSIISELTECNAALSQQRKKRQIPATLAPIDAIETYTQISSHPLNKTNRQGIISLDILYSKDLIATGNIDTNAVIFDRPSGQVLASLSGHSKKVTSVKFVGQGESIITGSADKTVRLWKGSDDGHYTCRQILKDHSAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDQSKGYTSAAFHPDGLILGTGTTDSLVKIWDVKSQANVAKFDGHVGHVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRNFAPYDKDTPTNSVEFDHSGSYLAVGGSDVRIYQVANVKSEWNLIKTFPDLSGTGAVLIFFASFLSFNISPLHTLISCLYSCCDST 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01506 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 431 IPR001680 GO:0005515
Tsu01g01506 516 MobiDBLite consensus disorder prediction 141 160 - -
Tsu01g01506 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Tsu01g01506 516 Gene3D - 202 490 IPR015943 GO:0005515
Tsu01g01506 516 ProSitePatterns Trp-Asp (WD) repeats signature. 368 382 IPR019775 -
Tsu01g01506 516 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Tsu01g01506 516 SUPERFAMILY WD40 repeat-like 223 466 IPR036322 GO:0005515
Tsu01g01506 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 294 - -
Tsu01g01506 516 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Tsu01g01506 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 294 IPR001680 GO:0005515
Tsu01g01506 516 Coils Coil 115 135 - -
Tsu01g01506 516 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 487 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Tsu01g01506 516 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
Tsu01g01506 516 SMART WD40_4 300 339 IPR001680 GO:0005515
Tsu01g01506 516 SMART WD40_4 342 381 IPR001680 GO:0005515
Tsu01g01506 516 SMART WD40_4 425 464 IPR001680 GO:0005515
Tsu01g01506 516 SMART WD40_4 255 294 IPR001680 GO:0005515
Tsu01g01506 516 SMART WD40_4 212 252 IPR001680 GO:0005515
Tsu01g01506 516 SMART WD40_4 384 422 IPR001680 GO:0005515
Tsu01g01506 516 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Tsu01g01506 516 CDD WD40 224 469 - -
Tsu01g01506 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 390 IPR001680 GO:0005515
Tsu01g01506 516 SUPERFAMILY RING/U-box 1 53 - -
Tsu01g01506 516 ProSiteProfiles Trp-Asp (WD) repeats profile. 307 348 IPR001680 GO:0005515
Tsu01g01506 516 Pfam WD domain, G-beta repeat 387 422 IPR001680 GO:0005515
Tsu01g01506 516 Pfam WD domain, G-beta repeat 356 381 IPR001680 GO:0005515
Tsu01g01506 516 Pfam WD domain, G-beta repeat 256 294 IPR001680 GO:0005515
Tsu01g01506 516 CDD RING-Ubox_PRP19 3 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01506 Tsu-Chr1 14575093 14583724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01506 1 489 U-box Gene Family AT2G33340 73.523 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01506 K10599 - gmx:100527039 883.248