Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01493 ATGGAATTAGAGATGGTAACTTCAAGTGAAGAAAGTGATGAGCAAGTAGTTCAAGAAGAATCTATAGAAACCAAACGTTCTTATGATTGCACATTTTGCAAAAGAGGTTTCACTAATGCAAGGGCATTAGGAGGTCACATGAATATTCATAGAAAAGAGAGaacaaattataaaaccaaACAAGGCACACCAAATTCCTCACCTTTTGTTCCAATTGTTTCAAACCAACCCTCAACATATTATTGCATTTTGGAACCTCCTAGGAACTATGACATGTATCTTCAACCATCAAAAGCTAACCCTTCCCCACCTAGCTTTTTTCAATATGATTTTCTTAACACAAACTCTCAATCTATGATGGGAAACAATTTGAGTCTCCAAATTGGTTCAAGCCATGAGGGTAATGATCATGTTTGGAGAGGAATAGGGAAAGATGGTGAAGGGGTGGACCTAGAGCTTAGACTTGGTCATGATTCATTCTCAAACTACTAA 492 0.3638 MELEMVTSSEESDEQVVQEESIETKRSYDCTFCKRGFTNARALGGHMNIHRKERTNYKTKQGTPNSSPFVPIVSNQPSTYYCILEPPRNYDMYLQPSKANPSPPSFFQYDFLNTNSQSMMGNNLSLQIGSSHEGNDHVWRGIGKDGEGVDLELRLGHDSFSNY 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01493 163 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 158 - -
Tsu01g01493 163 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g01493 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Tsu01g01493 163 Gene3D Classic Zinc Finger 6 68 - -
Tsu01g01493 163 MobiDBLite consensus disorder prediction 1 17 - -
Tsu01g01493 163 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Tsu01g01493 163 SUPERFAMILY beta-beta-alpha zinc fingers 25 55 IPR036236 -
Tsu01g01493 163 PANTHER OS07G0101800 PROTEIN 7 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01493 Tsu-Chr1 14437030 14437521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01493 19 156 C2H2 Transcription Factor Family AT3G09290 31.757 8.25e-15 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01493 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01493 - - mtr:MTR_1g044225 278.485