Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01492 ATGGATTCGTCGAAAAAACGCTGGACAAACGTGTTTAAAAACGACAACATTCAAAGTTCCCAGCATGGCATCAACTCCTccggtgGAGATGATGAAGAGAAACCTGTAAAACCAAAGTTCAGATGGTATCCAACTAAAGAGCAATTTCGAATTCTTGAAAGCATCTTCAACTCAGGGATGACAAACCCTTCAAGTGGCGAGATAAAGAGAATATGTGCGCAGTTACAAGAATTCGGCCCAATCGGTGAATCTAATGTATTCTACTGGTTTCAGAATCATAAGTCAAGAATTAAAGCTAAACATAAGCAAAGACTACCATATAATAGGAGGAgtcctaaaataataaaaaaatctgcagtttcttcatcttcatcatcttcctaTGATCACCAAAATGCACCTCCTAATGAATTAATGGCACCTCCTAATAATGAATTTTTTGCTATGAACCAAAACCAAGTTGGTGCTTTTTACACCCCCACTCAAACTGATTTTCAGCTACCTACAACTACACCCCCATTTTTCTCTGATCAGCTCCTTAATATGATTCAGCCTGCAGTGCCTCAACAAGAGAATGACATACTTCCTTTAAACCAAAACCAAGTTCCTACTCAAACTGATCTTCTTCAGCTGCCTAGAGCACCATTTTTCTCTAATGAGCTGCTCAATGTGATTCAGCCAGCAGTGCCTCAACAAATTGTTGATGTGCCTGATTTGTTGAATCATGAGGACTTTATGAATTATTGGAATGGAATCCAAATGAATGTACAACATGATCAAGGGAATAATCAAGATCAAGTTGCTTCAATGAATATGTTGCAACAAGAAGAACAACCACAAATGAATTTTGGGGTTAGTTCAAATTTAAGCAATCATGATTCAACTGATCTTGCTCCTCTTCCTCCAATTACTATTGATGCACCTGTTGTTAATCCATTCCCCAATACTCAATTTCAAGGTGTTGGTGAGCTTGATGGTGGTGCGGCGAAATGTACTGTGAGTATTAACAGCCAGGTATTTGACATTGATGTGGGACGTTTTAACGTCCGTGGAATCTTTGGAGATGGAGTCGTTCTAGCTGACTCCTTCTTCCAACCTGTTCCCATTGACGAGTGGGGTGTCACCCTTCAGCCGCTCCAAAATGGTGCTTCTTATTTCTTGGTACGCTCCCTGCGCGCCATTGTTGAATGTTTGAAGCTTTCTTCACACAACAATGGAGATGAATCAATACTCTTTACATGGTATCAGGCCTCCACTGGGGCATTACCACTATTGATTCTCATTCACCACACTGCTGCAAGTGTTAATCATGGCTTTCAGCATCAAGCTCCACAGAACAAGGGTTACCAGAATGATACATTGAACCCTTACTTCTTGCATCCTAATGAAAACCTAGCTTGGGATAGGTGCAACTCCATGATTATATCATGGATCAGCAATGCAGTGGAACCCGAAATTTCGCAAAGCATATTGTGGAAAGATACAAAGCTAGATTCGTGGCAAAAGGCCCTTCTTGATCAAAAGTTTAGCATTAAGGATTTAGGAGTGCTCAAGTATTTCTTAGGCTTTGAAGTTGCCAAATCCAAAGATGGTATTTCCTTATGTCAAAGAAAGTGCACACTTGATCTCATACAAGATGCTGGCTTAACTGGTAGTAATCCATGTTCCACTCCTATGCAACCTCAATTGCAACTCCACAAAACATCCGGTGAACCACTCCCTGACCCTACAACTTATAGAAGATTGATTGGCAAGCTCTTATATTTGACACATTCAAGACCTGAGATTTCTTATGTAGTAAGCAAACTCAGTCAATTCCTTGATTCTCCTACCACTGGCCACATGATTGCTGGCTTACATGTCCTCAAGTTTCTCAAAAATAACCCTGGACAAGGTTTGTTTTTTAGCTCTTCCTCCTCCCTCTCCCTCAAAGGCTTCTCTGATTCCGATTGGGGGGCATGTCCTGACACAAGAAGATATACCACTGGTTTCTGCTTCTTCTTTGGCTCTTCATTGATCAGTTGGAAAAGCAAAAAGCAGCATGTAATCTCTAGGTCATCATCTGAGGCTAAGTATCGAGCTCTTGCACAAGCTACTTATGAAGGTCAATGGCTGTTGTACTTGCTACAAGACTTTCAAGTCAACCATCATGGTCCATTCATCATATATTGTGACAATCAGTCAGCACTACATATTGCAGCCAATCCAGTCTTCCATGAAAGGACAAAACATATAGAAATTGACTGTCATGTTGTCAGGGATAAAGTTCAAAGTGGTGTCCTTCATCTTCTGCCAGTCACTTCTCAAGAACAAGTTGCAGACATTTTCACCAAGTCTCTACATACTGGTCCTTTCCACACACTTCTTGGCAAGCTTGGAGTTATTGACATCTACTCCAGCTTGAGGGGGGATGTTAAGATAGGTAGTTAG 2430 0.4004 MDSSKKRWTNVFKNDNIQSSQHGINSSGGDDEEKPVKPKFRWYPTKEQFRILESIFNSGMTNPSSGEIKRICAQLQEFGPIGESNVFYWFQNHKSRIKAKHKQRLPYNRRSPKIIKKSAVSSSSSSSYDHQNAPPNELMAPPNNEFFAMNQNQVGAFYTPTQTDFQLPTTTPPFFSDQLLNMIQPAVPQQENDILPLNQNQVPTQTDLLQLPRAPFFSNELLNVIQPAVPQQIVDVPDLLNHEDFMNYWNGIQMNVQHDQGNNQDQVASMNMLQQEEQPQMNFGVSSNLSNHDSTDLAPLPPITIDAPVVNPFPNTQFQGVGELDGGAAKCTVSINSQVFDIDVGRFNVRGIFGDGVVLADSFFQPVPIDEWGVTLQPLQNGASYFLVRSLRAIVECLKLSSHNNGDESILFTWYQASTGALPLLILIHHTAASVNHGFQHQAPQNKGYQNDTLNPYFLHPNENLAWDRCNSMIISWISNAVEPEISQSILWKDTKLDSWQKALLDQKFSIKDLGVLKYFLGFEVAKSKDGISLCQRKCTLDLIQDAGLTGSNPCSTPMQPQLQLHKTSGEPLPDPTTYRRLIGKLLYLTHSRPEISYVVSKLSQFLDSPTTGHMIAGLHVLKFLKNNPGQGLFFSSSSSLSLKGFSDSDWGACPDTRRYTTGFCFFFGSSLISWKSKKQHVISRSSSEAKYRALAQATYEGQWLLYLLQDFQVNHHGPFIIYCDNQSALHIAANPVFHERTKHIEIDCHVVRDKVQSGVLHLLPVTSQEQVADIFTKSLHTGPFHTLLGKLGVIDIYSSLRGDVKIGS 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01492 809 MobiDBLite consensus disorder prediction 100 143 - -
Tsu01g01492 809 MobiDBLite consensus disorder prediction 115 133 - -
Tsu01g01492 809 ProSiteProfiles 'Homeobox' domain profile. 35 100 IPR001356 GO:0003677
Tsu01g01492 809 CDD RNase_HI_RT_Ty1 648 782 - -
Tsu01g01492 809 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 502 559 IPR013103 -
Tsu01g01492 809 SUPERFAMILY Homeodomain-like 37 103 IPR009057 -
Tsu01g01492 809 MobiDBLite consensus disorder prediction 1 37 - -
Tsu01g01492 809 Pfam Homeodomain 39 98 IPR001356 GO:0003677
Tsu01g01492 809 SMART HOX_1 37 104 IPR001356 GO:0003677
Tsu01g01492 809 Gene3D - 39 105 - -
Tsu01g01492 809 MobiDBLite consensus disorder prediction 10 26 - -
Tsu01g01492 809 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 390 IPR044557 GO:0003700|GO:0050793
Tsu01g01492 809 CDD homeodomain 38 101 IPR001356 GO:0003677
Tsu01g01492 809 SUPERFAMILY DNA/RNA polymerases 518 750 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01492 Tsu-Chr1 14426550 14431789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01492 502 755 Receptor kinase-like Gene Family AT4G23160 50.787 1.37e-80 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Tsu01g01492 RVT_2 1.2e-09 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01492 - - lang:109356296 374.4