Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01490 ATGTATAAATCAAAAGCATTTGGATTCATAATTTTTCTGCTTCTATTATGTGTATCTGCAATTTCTGATGGATTTCCTAAATGCAACTGTGATGATGACACAAGCTGGTGGACTATTGAGAAGATTCTAGAATGTCAGAAAGTCGGCGATTTTCTAATCGCGGTGGCGTATTTTTCAATCCCTGTTGAGCTAATTTATTTCATCAGTTGCTCAAATTTTCCATTCAAATGGGTACTTTTTCAGTTCATAGCTTTTATTGTACTTTGTGGAATGACACATTTGTTCAATAGTTGGACTTATGGACCCCATACTTTTCAAATCATGGTGACACTTACTGTCTTAAAAGTCCTCACTGCTATGGTTTCGTGCGCGACTGCGATAACACTCGTTACTTTGATCCCTTTGCTGTTAAAAGTGAAGGTTAGAGAGTTGTTGTTGAAGCGAAAGACGAGGGAGCTCGGTATTGAGTATGGTATGATAATGAAACAGAATGAAGCTGGAATGCATGTAAGAATGCTTACTCAAGAGATTCGTAAATCGCTCGATAGACATAAGATTCTGTATACGACATTGGTTGAACTGTCGAAAACTTTAGGGCTGCAAAACTGTGCTGTTTGGATGCCTAATGTTGAGAAAACTGCGATGAACCTCACTCATGAATTGAATGGGAGGAATGTTAATTCTTCTATAGTGATTACAAATCCGGATGTTGTGAGAGTCAAGGCTGATAATGTAGTTATCATAATTGATTCTGAATCAGAGCTTGCTTCTGCGAGTAGTGGAGTGTCTGTTGATGCAGGACCGGTTGCTGCGATCCGAATGCCAATGCTTCGAGTTTGTGACTTCAAAGGTGGAACGCCGGAGCTAACGCAGGCGTGTTATGCGATACTTGTATTAGTACTTCCTAGTGAGGAGGCTAGATCATGGAGCAATCAAGAGTTGGAGATAATTAAAGTTGTTGCTGATCAGGTGGCTGTTGCTCTTTCTCATGCCGCGATTCTTGAAGAATCGCAACTTATAAAAGAGAAATTGGAGGAGCAAAACCGAGCGTTGCAACTGGAGAAAATGAATGCTATGATGGCGAGTGAAGCTAGAGCGGTTTTTCAGAAAGTCATGAGCAATGGAATGGGAAGGCCAATGCATTCAGTTATGGGTTTACTTTCAATGATGCAAGATGAGAGTTTGAAGAATGAACAGAAACTTATTGTGGATtcgatggtaaggacaagtggCGTCTTACCAAACTTAATGAACGATGCTATGGACAATTCGGATAGAGATGGTGGAAGTGGAAGATTTCCTTTGGAGATGAAATCTTTTGGTTTACATAATATGTTAAAAGAAGCAGCTTGCATTGCCAAGTGTATGAGTTTATGTAAAGGTTTGGGTTTTAAGGTTGAGGTTGATAAATCGTTGCCTAACCATGTTATCGGCGACGAAAAGAGGGTTTTTCAAGTGATTTTGCATATGGTTGGAAACCTAATAGATGGTAACCATGGTGGAGGGATTCTTGTGTTTCGAGTGTTTGCGGAATCAGGAAGCCGAGGAAGGACTGAACATGGATATGCAATTTGGAGACCAAGCTCGTCTAGCGGTGATGTGCATATTAGATTTGATGTACGAATAAATAGCAGTGATTCAGAGTTGGAAACCTCAGTTTCTTCAGGGCAGCTTGCAGGTAGGATGCATACGAGTGATCCAACGTTCGAGGAAACAATGAGCTTCAGCATTTGCAAGAAGATAATCCGGTCAATGAAAGGTAACATATGTTCAGTACCAAATGCTAGAGGCTTTCCTCAAGTCATGACTCTTGCTCTTTGGTTTCAATTACGCCGTTCTGTCTCGGTAACCATACCCGAACCAGGGGAGATTTTAGAGTCTTCAAGTTCGAATTCATTGTTCAGTGGTCTGCAAGTCTTGTTGGCCGACAATGACGATGTTAATAGGGCAGTGACACAAAAGTTTCTACGGAAACTAGGTTGTTCTGTTACATCTGTTTCTTCCGGATTCGAATGTTTTAGTCTTGTTGGACATGCTGGTACATCTCCCTTTGAAGTTGTGCTTTTGGATCTTCACTTGCCCGATTTAGATGGATTTGAAGTTACCGCGAGGATCCGGAAGTTTAAGAGCCGCAACTGGCCTATCATCATTGCTTTGACAGCAAGCTCCGAAGATTTGTGGGAAAAATGTATGCATATTGGATTTAATGGAGTTATCCGAAAACCGGTTCTGTTGGAAGGATTCGCAGCCGAACTCCGAAGAATCTTGAAGGGAAATTTGGCCCTATTAGGATCTTCAAGTTATTAA 2307 0.4062 MYKSKAFGFIIFLLLLCVSAISDGFPKCNCDDDTSWWTIEKILECQKVGDFLIAVAYFSIPVELIYFISCSNFPFKWVLFQFIAFIVLCGMTHLFNSWTYGPHTFQIMVTLTVLKVLTAMVSCATAITLVTLIPLLLKVKVRELLLKRKTRELGIEYGMIMKQNEAGMHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVEKTAMNLTHELNGRNVNSSIVITNPDVVRVKADNVVIIIDSESELASASSGVSVDAGPVAAIRMPMLRVCDFKGGTPELTQACYAILVLVLPSEEARSWSNQELEIIKVVADQVAVALSHAAILEESQLIKEKLEEQNRALQLEKMNAMMASEARAVFQKVMSNGMGRPMHSVMGLLSMMQDESLKNEQKLIVDSMVRTSGVLPNLMNDAMDNSDRDGGSGRFPLEMKSFGLHNMLKEAACIAKCMSLCKGLGFKVEVDKSLPNHVIGDEKRVFQVILHMVGNLIDGNHGGGILVFRVFAESGSRGRTEHGYAIWRPSSSSGDVHIRFDVRINSSDSELETSVSSGQLAGRMHTSDPTFEETMSFSICKKIIRSMKGNICSVPNARGFPQVMTLALWFQLRRSVSVTIPEPGEILESSSSNSLFSGLQVLLADNDDVNRAVTQKFLRKLGCSVTSVSSGFECFSLVGHAGTSPFEVVLLDLHLPDLDGFEVTARIRKFKSRNWPIIIALTASSEDLWEKCMHIGFNGVIRKPVLLEGFAAELRRILKGNLALLGSSSY 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01490 768 Coils Coil 334 361 - -
Tsu01g01490 768 SUPERFAMILY CheY-like 634 757 IPR011006 -
Tsu01g01490 768 Pfam Response regulator receiver domain 639 744 IPR001789 GO:0000160
Tsu01g01490 768 CDD HATPase_ETR2_ERS2-EIN4-like 472 606 - -
Tsu01g01490 768 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 11 757 - -
Tsu01g01490 768 Gene3D - 328 427 - -
Tsu01g01490 768 ProSiteProfiles Response regulatory domain profile. 638 756 IPR001789 GO:0000160
Tsu01g01490 768 PIRSF Ethylen_sen_hybr_HK 1 762 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Tsu01g01490 768 PANTHER ETHYLENE RESPONSE SENSOR 2 11 757 - -
Tsu01g01490 768 SMART gaf_1 182 338 IPR003018 GO:0005515
Tsu01g01490 768 Gene3D - 172 327 IPR029016 -
Tsu01g01490 768 SMART REC_2 637 752 IPR001789 GO:0000160
Tsu01g01490 768 SUPERFAMILY GAF domain-like 185 331 - -
Tsu01g01490 768 Gene3D - 430 606 IPR036890 -
Tsu01g01490 768 Pfam GAF domain 182 328 IPR003018 GO:0005515
Tsu01g01490 768 Gene3D - 637 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01490 Tsu-Chr1 14409868 14412538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01490 23 757 Miscellaneous Gene Families AT3G04580 52.988 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu01g01490 GAF 3.7e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01490 K14509 - gmx:100802948 1099.73