Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01489 ATGGAAGGGAACTACTCATACGTAGCCATCGTAGGATTGCCTGGGGTGGTAGATCATAACTCCCACCCGTTAGGTAGTCCACCTGGTATAAACAAACGCCACCACGCCGAACTTTTCATAAATGAAACCAAGAgaagagatgaagaagatgatgatgatgaagatagAGACAACGAGGATGATGAACCAAAAGAAGGTGCAGTTGAAATCGGAAACCGAAGACCAAGAGGAAGACCACCAGgttcaaaaaataaaccaaaaccacCAATTTTTGTAACAAGAGACAGTCCAAATTCACTGAAAAGTCATGTGATGGAAGTATCATCCGGAGCAGATGTAGCCGAATGCGTAGCTCAGTTTGCAAGAAGGCGACAGCGCGGTGTTTGTGTCTTAAGCGGTAGCGGATCAGTAGCAAATGTTACCCTTAGACAACCAGCAGCACCAGGAGCTGTTGTAGCACTACATGGAAGATTTGAGATTCTATCGTTAACCGGAGCTTTTCTACCTGGACCTGCTCCTCCAGGCGCTACAGGACTCACAGTGTACCTTGCTGGTGGACAAGGTCAAGTTGTTGGAGGAAGTGTTGTTGGATCTTTAATTGCAGCTGGACCTGTTATGGTTATTGCTGCTACTTTTGCTAATGCTACTTATGAGAGATTGCCACTTGAGGATGAAGAGGATGATGGCAGCGGCGGCGCTGGTCATGTAGGACATCATGTTGGAGGTGGTTCTTCTCCTCCTGGAATTGGAAGTAGTGGCGGAGGCGGTGGTGGTGTTGGTGGCGGTGGGGGCCACATGCAGTCTGGCCATCTTCCAGATCCATCTTCTTTGCCTTTGTATAATTTGCCACCAAATCTTCTTCCTAATGGTGGTCAGGTGGGACATGAATCTTTTCCTTGGCCTCATGGAATTAGGCCACCGTATTGA 927 0.4531 MEGNYSYVAIVGLPGVVDHNSHPLGSPPGINKRHHAELFINETKRRDEEDDDDEDRDNEDDEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFVTRDSPNSLKSHVMEVSSGADVAECVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGSLIAAGPVMVIAATFANATYERLPLEDEEDDGSGGAGHVGHHVGGGSSPPGIGSSGGGGGGVGGGGGHMQSGHLPDPSSLPLYNLPPNLLPNGGQVGHESFPWPHGIRPPY 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01489 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 45 308 - -
Tsu01g01489 308 MobiDBLite consensus disorder prediction 223 308 - -
Tsu01g01489 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 308 IPR014476 GO:0003680
Tsu01g01489 308 CDD DUF296 101 184 IPR005175 -
Tsu01g01489 308 ProSiteProfiles PPC domain profile profile. 97 235 IPR005175 -
Tsu01g01489 308 MobiDBLite consensus disorder prediction 22 98 - -
Tsu01g01489 308 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 213 IPR005175 -
Tsu01g01489 308 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 225 - -
Tsu01g01489 308 MobiDBLite consensus disorder prediction 47 62 - -
Tsu01g01489 308 Gene3D - 101 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01489 Tsu-Chr1 14369289 14372951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01489 12 308 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 60.333 2.46e-100 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01489 - - qsu:111993894 285.419