Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01487 atgaatgaaCTTAGCACACTTTGTGGAATCGAAGCTTGTGCAATAGTTTATGACAAAAACAATCCTCAAGCAGAGGTTTGGCCATCTGATTCAGGAGTCAAAAGTGTGTTATCGAGGTTTGGGAGTTTGTCTGAATTTGAACGAAGCAAAAAGAAGATGGATCAAGAGGTTTATTTAAGGGAAAGCATAGAGAAAGCCAGCGatcaattgaagaaaaaaaaggaggaACTTAGGAAGAAAGAAATGACCAATATAATTTACCATTACTTTCAAAATGGAGAAATTAATAGCAATTTAATGAGCAAATATGATCTCAATGATTTGTCATCTTTTATTGATGAGAATTATCTGAAGGAAATCGATCGGAAGATGAAAGGAATGCAAATTGAAGCCCAAGATCCATAG 405 0.3259 MNELSTLCGIEACAIVYDKNNPQAEVWPSDSGVKSVLSRFGSLSEFERSKKKMDQEVYLRESIEKASDQLKKKKEELRKKEMTNIIYHYFQNGEINSNLMSKYDLNDLSSFIDENYLKEIDRKMKGMQIEAQDP 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01487 134 Gene3D - 1 66 IPR036879 GO:0003677|GO:0046983
Tsu01g01487 134 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 128 - -
Tsu01g01487 134 PANTHER MADS BOX PROTEIN 1 128 - -
Tsu01g01487 134 Coils Coil 60 83 - -
Tsu01g01487 134 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01487 Tsu-Chr1 14348553 14348957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01487 1 125 Type I MADS-box Gene Family AT5G48670 41.600 1.92e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01487 - - mtr:MTR_3g465410 166.007