LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01487	atgaatgaaCTTAGCACACTTTGTGGAATCGAAGCTTGTGCAATAGTTTATGACAAAAACAATCCTCAAGCAGAGGTTTGGCCATCTGATTCAGGAGTCAAAAGTGTGTTATCGAGGTTTGGGAGTTTGTCTGAATTTGAACGAAGCAAAAAGAAGATGGATCAAGAGGTTTATTTAAGGGAAAGCATAGAGAAAGCCAGCGatcaattgaagaaaaaaaaggaggaACTTAGGAAGAAAGAAATGACCAATATAATTTACCATTACTTTCAAAATGGAGAAATTAATAGCAATTTAATGAGCAAATATGATCTCAATGATTTGTCATCTTTTATTGATGAGAATTATCTGAAGGAAATCGATCGGAAGATGAAAGGAATGCAAATTGAAGCCCAAGATCCATAG	405	0.3259	MNELSTLCGIEACAIVYDKNNPQAEVWPSDSGVKSVLSRFGSLSEFERSKKKMDQEVYLRESIEKASDQLKKKKEELRKKEMTNIIYHYFQNGEINSNLMSKYDLNDLSSFIDENYLKEIDRKMKGMQIEAQDP	134

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01487	134	Gene3D	-	1	66	IPR036879	GO:0003677\|GO:0046983
	Tsu01g01487	134	PANTHER	MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN	1	128	-	-
	Tsu01g01487	134	PANTHER	MADS BOX PROTEIN	1	128	-	-
	Tsu01g01487	134	Coils	Coil	60	83	-	-
	Tsu01g01487	134	SUPERFAMILY	SRF-like	2	63	IPR036879	GO:0003677\|GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01487	Tsu-Chr1	14348553	14348957	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01487	1	125	Type I MADS-box Gene Family	AT5G48670	41.600	1.92e-29	107

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01487	-		-	mtr:MTR_3g465410	166.007

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