LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01486	ATGGTTGCTACTTCGTTGTCTCGCCCGTGTTACTTCATCTTAAGGTGTACGGTTGATCGGACTGCACTCAATGATTCTAGACCCGACCTGCGTAGAATAGAGTTGTACACATATGTACATGACAGGGGACCACGGGGAACTTTACTTTCTATAACTGACATTGACCCAAATTGGTACGATGCTCATGCAACTTTCTATGGTGGTTCCTCGGGAGCTGGCACCATGCAGGGAGTTTGTTGTTATGGTGATCTCTACAAACAAGGATATGGACTTCTAAACACAGCTTTATTCAATAACGGAGCTACTTGtggtgtttgtgttttgttaGTTTGTGTCAACGATCCTCAATGGTGCATAAAGGGTGCAAGGCCAATCACGGTAACCGCAACAAATTTTTGGCCTCCAAATTATGTCCAGCCTGGTGCTTGTAACCCACCACTAAAACACTTTGACTTGAGTTATAAAATGTTCACTTCCATTGCCTACGAAAAAGGCATACCCGTTAAATATCGACGTGTTTAA	522	0.4215	MVATSLSRPCYFILRCTVDRTALNDSRPDLRRIELYTYVHDRGPRGTLLSITDIDPNWYDAHATFYGGSSGAGTMQGVCCYGDLYKQGYGLLNTALFNNGATCGVCVLLVCVNDPQWCIKGARPITVTATNFWPPNYVQPGACNPPLKHFDLSYKMFTSIAYEKGIPVKYRRV	173

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01486	173	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	67	173	IPR007112	-
	Tsu01g01486	173	SUPERFAMILY	Barwin-like endoglucanases	52	173	IPR036908	-
	Tsu01g01486	173	Pfam	Lytic transglycolase	92	170	IPR009009	-
	Tsu01g01486	173	PANTHER	EXPANSIN-A15	47	173	IPR002963	GO:0009664
	Tsu01g01486	173	Gene3D	-	47	173	IPR036908	-
	Tsu01g01486	173	SMART	dpbb_1	92	170	IPR007112	-
	Tsu01g01486	173	PRINTS	Expansin signature	125	135	IPR002963	GO:0009664
	Tsu01g01486	173	PRINTS	Expansin signature	111	122	IPR002963	GO:0009664
	Tsu01g01486	173	PRINTS	Expansin signature	84	98	IPR002963	GO:0009664
	Tsu01g01486	173	PRINTS	Expansin signature	140	157	IPR002963	GO:0009664

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01486	Tsu-Chr1	14336408	14338731	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01486	48	173	Expansin Gene Family	AT5G39280	56.716	5.92e-44	145

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01486	-		-	gra:105779214	177.178

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