Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01486 ATGGTTGCTACTTCGTTGTCTCGCCCGTGTTACTTCATCTTAAGGTGTACGGTTGATCGGACTGCACTCAATGATTCTAGACCCGACCTGCGTAGAATAGAGTTGTACACATATGTACATGACAGGGGACCACGGGGAACTTTACTTTCTATAACTGACATTGACCCAAATTGGTACGATGCTCATGCAACTTTCTATGGTGGTTCCTCGGGAGCTGGCACCATGCAGGGAGTTTGTTGTTATGGTGATCTCTACAAACAAGGATATGGACTTCTAAACACAGCTTTATTCAATAACGGAGCTACTTGtggtgtttgtgttttgttaGTTTGTGTCAACGATCCTCAATGGTGCATAAAGGGTGCAAGGCCAATCACGGTAACCGCAACAAATTTTTGGCCTCCAAATTATGTCCAGCCTGGTGCTTGTAACCCACCACTAAAACACTTTGACTTGAGTTATAAAATGTTCACTTCCATTGCCTACGAAAAAGGCATACCCGTTAAATATCGACGTGTTTAA 522 0.4215 MVATSLSRPCYFILRCTVDRTALNDSRPDLRRIELYTYVHDRGPRGTLLSITDIDPNWYDAHATFYGGSSGAGTMQGVCCYGDLYKQGYGLLNTALFNNGATCGVCVLLVCVNDPQWCIKGARPITVTATNFWPPNYVQPGACNPPLKHFDLSYKMFTSIAYEKGIPVKYRRV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01486 173 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 67 173 IPR007112 -
Tsu01g01486 173 SUPERFAMILY Barwin-like endoglucanases 52 173 IPR036908 -
Tsu01g01486 173 Pfam Lytic transglycolase 92 170 IPR009009 -
Tsu01g01486 173 PANTHER EXPANSIN-A15 47 173 IPR002963 GO:0009664
Tsu01g01486 173 Gene3D - 47 173 IPR036908 -
Tsu01g01486 173 SMART dpbb_1 92 170 IPR007112 -
Tsu01g01486 173 PRINTS Expansin signature 125 135 IPR002963 GO:0009664
Tsu01g01486 173 PRINTS Expansin signature 111 122 IPR002963 GO:0009664
Tsu01g01486 173 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Tsu01g01486 173 PRINTS Expansin signature 140 157 IPR002963 GO:0009664
Tsu01g01486 173 PRINTS Expansin/Lol pI family signature 163 173 IPR007118 GO:0005576
Tsu01g01486 173 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Tsu01g01486 173 PRINTS Expansin/Lol pI family signature 57 72 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01486 Tsu-Chr1 14336408 14338731 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01486 48 173 Expansin Gene Family AT5G39280 56.716 5.92e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01486 - - gra:105779214 177.178