Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01484 ATGAGAACGATACGCCGAAGCAAGGATGACCGAGAAGAGGGGGCTTGTGGTTATGGTGATCTCTACAAACAAGGATATGGACTTGTAAACACAGCACTAAGCACGGGTCTATTTAATAACGGAGCTACTTGTGGTGTTTGTTTTCAGTTAGTTTGTGTCAATGATCCTCAATGGTGCATAAGGGCACAAGGCCAATCAAGTGTCAAAGGGTCTAAGACTGGATGGATTCCCATGAAACGCAATTTTGGACAAAGTGGAATACTGGAGTGA 270 0.4407 MRTIRRSKDDREEGACGYGDLYKQGYGLVNTALSTGLFNNGATCGVCFQLVCVNDPQWCIRAQGQSSVKGSKTGWIPMKRNFGQSGILE 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01484 89 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 13 89 IPR007112 -
Tsu01g01484 89 PRINTS Expansin/Lol pI family signature 34 52 IPR007118 GO:0005576
Tsu01g01484 89 PRINTS Expansin/Lol pI family signature 12 30 IPR007118 GO:0005576
Tsu01g01484 89 PANTHER EXPANSIN-A15 10 61 IPR002963 GO:0009664
Tsu01g01484 89 PANTHER EXPANSIN 10 61 - -
Tsu01g01484 89 Gene3D - 2 75 IPR036908 -
Tsu01g01484 89 PRINTS Expansin signature 25 39 IPR002963 GO:0009664
Tsu01g01484 89 PRINTS Expansin signature 52 63 IPR002963 GO:0009664
Tsu01g01484 89 SUPERFAMILY Barwin-like endoglucanases 11 60 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01484 Tsu-Chr1 14311448 14312825 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01484 10 77 Expansin Gene Family AT5G39280 58.824 4.70e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01484 - - gmx:100789595 98.5969