Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01477 ATGACGGAACAAGAAAATGGAACGTTCCAGAAGGTTTTCCGTACAACGGAAAATGACGAAGTCGTTTTTAGAAACGGCAATGCAGTTATCGTCGCTCAACCTCTATCCGTTGTCCGTGCCTTAACCAGCACCGGCGGTGCTCGCGTTCTTGCTACGCCGCCGAATCTGAACCCTAACTCCGATGAGTTTGATTCTTTCAAAACTTCGATGATCAAAGTGAAAGACGAGCCTCAAGAATTTGAAAAAGATGTCAAATCTGTTTCCGTTGATTCTCAATCGGCGGCGGCGGTGGTTTCTGAAGAGCGGCGTTCGATGCTTTCGTTTGACGATTTTCTTAAGGCTACGAATACGCAAGTTGCTTCTGTTGATGAATCGTTGAAATCAATGGAAGTTGAATCGACGAAGATGGAAAGTGCTGATGTTGATATGGTTTGTGAGACGCAGGAGTCGGTTAAGGTTGAATGGGTAGATGAATCGCTGAAATCAATGGAAGTTGAACCACTGATTCGAATGGCGGAAGAACGTACCAATGTTGATGTGGCTTGTGAGACGCAGGAATCGGTTACGGTTGAACCGGTTAAAGGAACAACACCAATTGAACCGGTTGGACTGGTTTGTGCAGAGAAGCAAGCGGTTAGTGATGATGAAGTGGAGGTTTTGAAGGTAGTGAAGGGGAAACAAGCTGTAAGTGATGAAGTGAGGGTTTTGAAGGTGGTGAAGAAGGAAGTAGTAGAAGAGAAGATCCTGATTCCGAATCTCGATGATGGTGATTTCCCTGTTGAACCTGGCTGGTCATTGTTGGGAAGCAAGGTTGAGACTGCCACTTCAATGGCTAAAGGAGTGAGGAGATTGATGGATAATGAGattgtttatttcaatttcccTAATCCACATGCCTCTTACAAGTTTCAATCGATCGTTCGTGTCTCAACCAAACGTTCTGGAGTGgttgGGAGATTGCCAATGGAATGGGCAAAATCTGTTATTCCTCTTGTACAATCAGGAAACGTTAAGGTACGAGGCCGATGCGTTGCTGCACCAGTTAAACTGGAAACAATGCAAGAAATCTATATTTTAGTTAGTTTTTATGTTCACAACTCTTTATTTGCTGAGTCTGTTGATACCTCTTGGAGGTTAGAGGCTTGTGGTCACATTAACTCAACTGCTTATCCACTCTTTACACTGTTAAATATGCTAGGGATTGAGCCATATAGGAAGgCTGATTTCACCCCTGAGGAAATGAAGGCTCGAAAGCGGGTGCTTAAGCTTGATTCAGATGAAGCTTTGGTATTTCCTGTCAATAAGCGAAGAAAACCTGCTGAGCAACTTCCGCAGCCAAGTGAGGATGAACAAGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGAGCTGCAGAAGTCTTTGACCTAGAGGAGAAGGAAGCACCAAAGACCCTAATGTGTAGTCTAAAGCCTTACCAGAGTCAAGCTCTATATTGGATGACAGAAATTGAGAAGGGAGGTGATGATGAAAATGCTGAGAGAAATTTACACCCTTGTTGGTCAGCCTACAATTTATGCCATGGAAAGACAATTTATGTCAACATATTTACTGGAGAGGCAGCAAAGAAATTTCCACAAACAACACAGATGGCAAGAGGAGGAATTCTGGCAGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTTTGATTCTAAGTAATCCAGGCAGGATGAAGTCTGATGACAGTGATGCAGAGAGCATATATGACAACATTTTCTCAACTAAGAGGAGGAATGTTAACCCATATAATGTAGAGGGTGGCACTCTAATTGTTTGTCCCATGGCATTATTGGGTCAGTGGAAGGATGAACTTGAAACACATTCAAAAGCAGGCAGCATATCCATATTTGTTCATTATGGTGGGGGCAGAACCACTAATCCTGGTTTGTtgttagagtatgatgttgtCTTGACTACTTATGGTGTTCTATCTGCTGCATTTAAAAGTGAAGGAGAGAATAGCATCTACCACAAGGTCAAGTGGTACAGAGTGGTGCTAGATGAAGCTCATCATATAAAAACCCATAAAAGCCAGGTTGCCCAGGCTGCTATTGCTCTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTAGAAGATCTATACAGTCTCTTGTCTTTCTTGCGTGTTGAACCTTGGTGCAACTGGCAGTGGTGGACTAAGTTGATCCAAAAGCCCTATGAGCAAGGTGATCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTGAGGACATTGATGTTAAGAAGAACTAAGGAAACAAAGGATAAACATGGAAGGCCTATACTTGTCCTGCCACCAACTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGATGCTCTCTTCCTGCGATCTAAAGTCCAATTTGAGCAGTATGTTGCACAAGGAAAGGTTCTTAACCACTATGCAAATATCCTTGACCTACTAATGCAGTTGAGACGGTGCTGCAACCATCCATTTTTGGTCATGAGTGGAAGTGATCCTGCGAAATATGCAGACTTGAGCAGACTTGCAAGAAAATTCCTTGAGTCTCATACTGAATCATCTGATATGTGCTGTGAAAGTGGTGCACAGCAAAATGCAGAATTGAACAAACTTGCTAGTACATTTCTACAGAATTCTGTTTCTGCTTCGCACTCTATCCAATCTCGTGAATACATTGATGAGGTTTTGGGGCATATTCAAAAGGGTGAAACTGTTGAATGCTCTATATGTATGGAATCACCTGATGATCCTGTTTTTACACCATGTGCACATCAGTTTTGTAGAGAATGCCTATTCAATTGCTGGGGTACCTCAATGGGTGGTAAATGTCCAATCTGTCGTCAATCACTAAAGAAAAATGATCTTATTGCACTTCGAACAGAAAGCCCATTCAAGGTTGATATTGAGAACAATTTGACGGAGTCTTCAAAGCTTTCAAAGCTCTTCGATTTCTTAGAACAAATTCAGAAATTTTCTGATGAAAAAAGTATTGTTTTTAGTCAATGGACTTCATTTTTTGATCTATTGGAGAATCCATTGAGGAAGAGAGGTATAGGATTCTTAAGATTTGATGGAAAGTTAACTCAGAAGCAGAGAGAAAAAGTTCTGAAAGAATTTAACGACACAAAAGAGAAAAGGGTTTTGTTGATGTCACTAAAAGCTGGTGGTGTGGGCTTGAATTTGACAGCAGCCTCAAATGTTTTCCTTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGGATTCATCGTATCGGGCAAAAGCGAAGGGTTACTGTAAGAAGATTCATTGTGAAGGGCACAGTGGAAGATCGGTTGCAACAAGTGCAAGCCAAGAAACAGAAGATGATATCTGGTGCCCTCACTGATGATGAAGTTAGGACTTCCAGGATTCAAGACCTCAAAATGCTATTCTCATAG 3498 0.4162 MTEQENGTFQKVFRTTENDEVVFRNGNAVIVAQPLSVVRALTSTGGARVLATPPNLNPNSDEFDSFKTSMIKVKDEPQEFEKDVKSVSVDSQSAAAVVSEERRSMLSFDDFLKATNTQVASVDESLKSMEVESTKMESADVDMVCETQESVKVEWVDESLKSMEVEPLIRMAEERTNVDVACETQESVTVEPVKGTTPIEPVGLVCAEKQAVSDDEVEVLKVVKGKQAVSDEVRVLKVVKKEVVEEKILIPNLDDGDFPVEPGWSLLGSKVETATSMAKGVRRLMDNEIVYFNFPNPHASYKFQSIVRVSTKRSGVVGRLPMEWAKSVIPLVQSGNVKVRGRCVAAPVKLETMQEIYILVSFYVHNSLFAESVDTSWRLEACGHINSTAYPLFTLLNMLGIEPYRKADFTPEEMKARKRVLKLDSDEALVFPVNKRRKPAEQLPQPSEDEQALSESALNKLVGAAEVFDLEEKEAPKTLMCSLKPYQSQALYWMTEIEKGGDDENAERNLHPCWSAYNLCHGKTIYVNIFTGEAAKKFPQTTQMARGGILADAMGLGKTVMTIALILSNPGRMKSDDSDAESIYDNIFSTKRRNVNPYNVEGGTLIVCPMALLGQWKDELETHSKAGSISIFVHYGGGRTTNPGLLLEYDVVLTTYGVLSAAFKSEGENSIYHKVKWYRVVLDEAHHIKTHKSQVAQAAIALSSHCRWCLTGTPLQNSLEDLYSLLSFLRVEPWCNWQWWTKLIQKPYEQGDQRALKLVKGILRTLMLRRTKETKDKHGRPILVLPPTDIQLIECEQSESERDFYDALFLRSKVQFEQYVAQGKVLNHYANILDLLMQLRRCCNHPFLVMSGSDPAKYADLSRLARKFLESHTESSDMCCESGAQQNAELNKLASTFLQNSVSASHSIQSREYIDEVLGHIQKGETVECSICMESPDDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQSLKKNDLIALRTESPFKVDIENNLTESSKLSKLFDFLEQIQKFSDEKSIVFSQWTSFFDLLENPLRKRGIGFLRFDGKLTQKQREKVLKEFNDTKEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVTVRRFIVKGTVEDRLQQVQAKKQKMISGALTDDEVRTSRIQDLKMLFS 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01477 1165 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1002 1161 IPR001650 -
Tsu01g01477 1165 PANTHER DNA REPAIR PROTEIN RAD5B 430 1164 - -
Tsu01g01477 1165 ProSitePatterns Zinc finger RING-type signature. 944 953 IPR017907 -
Tsu01g01477 1165 CDD SF2_C_SNF 985 1123 - -
Tsu01g01477 1165 Pfam Zinc finger, C3HC4 type (RING finger) 927 973 - -
Tsu01g01477 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 770 IPR027417 -
Tsu01g01477 1165 Gene3D - 530 771 IPR038718 -
Tsu01g01477 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 783 1156 IPR027417 -
Tsu01g01477 1165 Pfam SNF2-related domain 486 848 IPR000330 GO:0005524|GO:0140658
Tsu01g01477 1165 Pfam Helicase conserved C-terminal domain 1000 1112 IPR001650 -
Tsu01g01477 1165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 915 977 IPR013083 -
Tsu01g01477 1165 SMART ultradead3 479 751 IPR014001 -
Tsu01g01477 1165 ProSiteProfiles Zinc finger RING-type profile. 929 969 IPR001841 -
Tsu01g01477 1165 CDD DEXDc_SHPRH-like 483 770 - -
Tsu01g01477 1165 SUPERFAMILY RING/U-box 921 974 - -
Tsu01g01477 1165 Pfam HIRAN domain 273 358 IPR014905 GO:0003676|GO:0008270|GO:0016818
Tsu01g01477 1165 SMART helicmild6 1029 1112 IPR001650 -
Tsu01g01477 1165 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 430 1164 - -
Tsu01g01477 1165 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 539 732 IPR014001 -
Tsu01g01477 1165 SMART ring_2 929 968 IPR001841 -
Tsu01g01477 1165 Gene3D - 978 1164 IPR027417 -
Tsu01g01477 1165 Gene3D - 784 879 IPR027417 -
Tsu01g01477 1165 SMART HIRAN_2 267 364 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01477 Tsu-Chr1 14225965 14232119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01477 183 1164 RAD5 or RAD16-like Gene Family AT5G43530 57.646 0.0 1147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu01g01477 SNF2_N 6.6e-82 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01477 K15505 - gmx:100806677 1466.44