Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01473 atgaagaatttttcTGGGACACCTGGCACTTTTCTTGGTTTGATTCTTAGGATGGCACAGTTTATTTTTGCTGCTGGTTCAATTGCTTCTATTGCTACCACACCTAGTTTCTTTAATTTCACTGCTTTTTGTTACTTGATAGCTTCAATGGCTTTACAAATCATTTGGAGTTTTGCACTTGCTTTGTTGGATGCATATTCCTTGGTGAGAAAGAAGGTTCTGCTTAACCCTGTATTGATTAGCCTCTTTGTTGTTGGAGATTGGGTAACAGCAACACTGTCTCTAGCTGCAGCTTCTGCCTCAGCTGGCATTACAGTTTTGTACTTCCATGATATGGGACACTGCAATTTCGGAGACGAGTGCCAAAAATACCAGATTTCTGTTGCTTTGGCATTCATGAGCTGGATATCAATTTCAATATCATCTCTAATTATGCTTTGGCTATTAGCGGCAGGATAG 459 0.3922 MKNFSGTPGTFLGLILRMAQFIFAAGSIASIATTPSFFNFTAFCYLIASMALQIIWSFALALLDAYSLVRKKVLLNPVLISLFVVGDWVTATLSLAAASASAGITVLYFHDMGHCNFGDECQKYQISVALAFMSWISISISSLIMLWLLAAG 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01473 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 -
Tsu01g01473 152 Pfam Casparian strip membrane protein domain 8 136 IPR006702 -
Tsu01g01473 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01473 Tsu-Chr1 14202347 14205620 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu01g01473 DUF588 2.6e-24 CL0396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01473 - - gmx:100790715 230.335