Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01472 ATGGATTCTTATGAATTATTAGAAAACATCGATTCTTTAGATTTTCTCGATTACTCTAATTTCATCGATCCTTCTCCTCCCACAGATTTCCTTTGGTCTAATCCAAGTGTGAGCACGGAAATTGACTTTGCAAGTGTGAGCACGGTCGATTCAAAAAAAAGTGTGAGCACGGAAATTGACATTCCAAGTGGCGCTGTTGCGTGTCAAGAAGAGAATACTAGGAAGAGGGGACGTGCTGAATCATGCTACAAGTCAGGAACAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAAACTCAATGAAAGGTTTTGTGATTTGAGTGCTGTTTTGGAACCCGGAAGACCTGTGAGAACAGATAAACCTGCTATACTTGATGATGCTATCAGAGTCTTGAACCAACTTAAAACTGAAGCTCAGGAACtgaaagaaacaaatgaaaaattattagaggaaataaaatgtttaaagGCAGAGAAAAATGAACTGCGTGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAAAAGATTGAGAAGCAATTGAAAACTATGCCGCCGCCTATTTCACCAGCAGGGTTTATGCCTCCTCATCCTATGGCTGCTGCTTATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTATATTCCAATGTGGCAATATCTTCCTCAGTCGGCTCGCGATACATCCCAAGATCATGAGCTCAGGCCTCCTGCTGCATAG 729 0.4033 MDSYELLENIDSLDFLDYSNFIDPSPPTDFLWSNPSVSTEIDFASVSTVDSKKSVSTEIDIPSGAVACQEENTRKRGRAESCYKSGTKACREKLRREKLNERFCDLSAVLEPGRPVRTDKPAILDDAIRVLNQLKTEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKIEKQLKTMPPPISPAGFMPPHPMAAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01472 242 CDD bHLH_AtILR3_like 88 163 - -
Tsu01g01472 242 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 83 134 IPR011598 GO:0046983
Tsu01g01472 242 Gene3D - 87 167 IPR036638 GO:0046983
Tsu01g01472 242 SMART finulus 89 140 IPR011598 GO:0046983
Tsu01g01472 242 Pfam Helix-loop-helix DNA-binding domain 86 134 IPR011598 GO:0046983
Tsu01g01472 242 PANTHER TRANSCRIPTION FACTOR BHLH104 11 242 - -
Tsu01g01472 242 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 148 IPR036638 GO:0046983
Tsu01g01472 242 Coils Coil 124 179 - -
Tsu01g01472 242 PANTHER BHLH TRANSCRIPTION FACTOR 11 242 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01472 Tsu-Chr1 14196769 14200482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01472 63 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 68.280 4.71e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g01472 HLH 9.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01472 - - mtr:MTR_1g043430 389.423