Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01467 ATGAATTTTGTAACCAAAACCCACATAATCTATAATGTGCCACAAGCTCTTTCACCTATTCAAATTAATCCTCCTAATTCTGCTACAAATTTTCCAACCATAGCAATAATTGTAGTAGGAATGATGGCAACATCTATGTTGCTAATGGCCTACTACACCTTTGTGATCAAATGTTGTATCAATTGGAACAATATTGATCTTTTAGCaagaaatttttctttttcaagacAACATGAAAATCAATCTTCATCGATCTCAATAGCATCGGAGCAAAGAGGACTAGACCAAGAAGTGATTAACTCAATTCCAATAATTCATTacaaaagtgaaaaagaaaatggtGAAGGAAACTTTAGTGAATGTGCTTTTTGTTTGAGTGAGTTTCAACAAGATGAGAAACTAAGAGTTATACCAAATTGTAACCATTTATTTCACAttgattgtgttgatatttGGCTTCAAAACAATGCAAATTGTCCACTTTGTAGAAGTAAGGTTTCATTAACAAGAGAAGTACAAGTAGAACATGTTCTAACTCCAAGACCTTCACCTTATTTTCAAAGCCAAGATGTTGAAAACATCATTAGTGGTTGTGAAGATTTTGTTGTGATTGATTTGGATAATAATGAACATGTTGATGAAGGACAAAACTTGCATGAAAGAAGACAAGAAAGAGGTAAAAATTTGGAAGTGTCAAGAGATTATATTAGTCCTTTACACAAGAAAGCAATTAAGCTTCAAAAAGTGACTAGCATGGGAGATGAGTGTATAATTGGTATTAAAGACAAATTTGATGGTATCTTAGTTCAACCAATTAGAAGGTCTTTCTCAATGGACTTATCCATTGAAGTTTGTGGTGATAGTAGTAGTATAGCAAAGAGATCATTCTTTTCCTTTGGACATGGAAGTAGATTAAGAAGTTATGTTTTACCTATTCATTTGGAACCTTAA 951 0.307 MNFVTKTHIIYNVPQALSPIQINPPNSATNFPTIAIIVVGMMATSMLLMAYYTFVIKCCINWNNIDLLARNFSFSRQHENQSSSISIASEQRGLDQEVINSIPIIHYKSEKENGEGNFSECAFCLSEFQQDEKLRVIPNCNHLFHIDCVDIWLQNNANCPLCRSKVSLTREVQVEHVLTPRPSPYFQSQDVENIISGCEDFVVIDLDNNEHVDEGQNLHERRQERGKNLEVSRDYISPLHKKAIKLQKVTSMGDECIIGIKDKFDGILVQPIRRSFSMDLSIEVCGDSSSIAKRSFFSFGHGSRLRSYVLPIHLEP 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01467 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 168 IPR013083 -
Tsu01g01467 316 PANTHER RING-H2 FINGER PROTEIN ATL16 19 282 - -
Tsu01g01467 316 SMART ring_2 121 162 IPR001841 -
Tsu01g01467 316 Pfam Ring finger domain 120 163 IPR001841 -
Tsu01g01467 316 CDD RING-H2_PA-TM-RING 120 163 - -
Tsu01g01467 316 PANTHER RING-H2 FINGER PROTEIN ATL16 19 282 IPR044600 GO:0016567|GO:0016740
Tsu01g01467 316 SUPERFAMILY RING/U-box 98 170 - -
Tsu01g01467 316 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01467 Tsu-Chr1 14157987 14159040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01467 26 316 C3H Transcription Factor Family AT1G04360 40.113 3.91e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01467 - - mtr:MTR_1g043410 444.121