Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01466 ATGGATTGTTCCTTCATACCcttttcatcaaaatcaaatttttttccacaaaattCATTTGGGTCACAAGATTCAATCTCATTAAATCCAAAGAATCACCATGAGTTTCTTCCCTTCAATGAAAATGATCCAGAAGAGATGCTTCTATATGGCATgataacatcatcatcacatcaacaaaaactaaacacAAGTAGTAAACAAGAAACAACTACAAAGAACAACAAAGAGAAGAACAACAAATCCTACCGAGGCGTGCGAAGACGACCGTGGGGGAAATTCGCAGCCGAAATAAGGGATTCGACAAGACATGGAATAAGGGTTTGGCTTGGAACATTTGATAGTGCTGAAGCAGCAGCATTAGCTTATGATCAAGCTGCTTTTTCAATGAGAGGTTCATCTGCAACACTTAATTTTTCAGTTGAAAAGGTTAAGGAATCACTTAGAGACATGAATTATGTGTTGtctaatgatgatgaatgttcCCCTGTTATTGCtttgaagagaaaacattcaatgAGACGTAAAatggatgaaaagaagaagaaacatgaCACAGATGTTAGGATTGATGATTTGGTTGTGTTTGAAGATCTTGGTGCTGAATATTTGGAACAATTGTTGATGTCTTCTGATGATAATCAAAATACTTGGTGA 657 0.3014 MDCSFIPFSSKSNFFPQNSFGSQDSISLNPKNHHEFLPFNENDPEEMLLYGMITSSSHQQKLNTSSKQETTTKNNKEKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSATLNFSVEKVKESLRDMNYVLSNDDECSPVIALKRKHSMRRKMDEKKKKHDTDVRIDDLVVFEDLGAEYLEQLLMSSDDNQNTW 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01466 218 MobiDBLite consensus disorder prediction 57 86 - -
Tsu01g01466 218 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Tsu01g01466 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 210 - -
Tsu01g01466 218 CDD AP2 83 139 IPR001471 GO:0003700|GO:0006355
Tsu01g01466 218 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Tsu01g01466 218 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Tsu01g01466 218 PANTHER DNA-BINDING DOMAIN 28 210 IPR044808 GO:0003700|GO:0009873
Tsu01g01466 218 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Tsu01g01466 218 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Tsu01g01466 218 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Tsu01g01466 218 Gene3D AP2/ERF domain 81 142 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01466 Tsu-Chr1 14136119 14136873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01466 5 218 AP2-EREBP Transcription Factor Family AT3G23240 58.447 3.44e-82 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g01466 AP2 7.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01466 K14516 - jre:109007057 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03664 07 42866364 42866963 Tsu01g01466 01 14136119 14136873 PCT