Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01461 ATGGTTAGGGCTCCTTGTTGTGAAAAGAAGGGATTGAAGAAGGGTCCTTGGACCTCAGAAGAAGATCAAATTCTCACATCTTACATCCAAAAACATGGACATAGCAATTGGCGCGCCCTCCCAAAACATGCCGGCTTATTAAGATGTGGAAAGAGTTGTAGATTGAGATGGATTAACTATTTAAGACCAGATATTAAGAGAGGAAATTTCACAAATGAAGAAGAGGATATTATCATTAAGATGCATGAGTTACTTGGGAACAGGTGGTCAGCAATAGCTGCAAAATTACCAGGAAGAACGgacaatgaaataaaaaatgtgtggCACACACATTTGAAGAAGAGATTAACCAAAACTGATaataatcaatcaaattcaaataccaaaaaaagagcaacaaaatcaaaaatcaaaagaacTGATTCCAATTCAAGTACTTTAATTCAATCAAATGAACCTTCGAATAGTCCTAATAATTATTTCATTGAAATGGAAACTACATCATCAAATTCCAATTTTTCTAGTGATTTTTCATCACAAGGAAAAACTATGGACAATAGTATCAATAATTTTGAAGACCCTGAAGACTCATTAGTGACAATGCTTGAAATTGATGAAAGTTTTTGGTCAGAGACAGTAACTGATGATGAAATTAGTTCAACCATGCCATCAAATGAATTGCCAAATCAGCAATACCCTATTAATAATTCAGTGgaaaatttccaaaaatcctttgatgatgatgatgatggtatgGATTTTTGGTATGATCTTTTCATTAGATCAGGGGAATCAACAGAATTGCCAGAGTTTTAG 816 0.2978 MVRAPCCEKKGLKKGPWTSEEDQILTSYIQKHGHSNWRALPKHAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEDIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLTKTDNNQSNSNTKKRATKSKIKRTDSNSSTLIQSNEPSNSPNNYFIEMETTSSNSNFSSDFSSQGKTMDNSINNFEDPEDSLVTMLEIDESFWSETVTDDEISSTMPSNELPNQQYPINNSVENFQKSFDDDDDGMDFWYDLFIRSGESTELPEF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01461 271 Gene3D - 69 144 - -
Tsu01g01461 271 CDD SANT 69 112 IPR001005 -
Tsu01g01461 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu01g01461 271 CDD SANT 16 61 IPR001005 -
Tsu01g01461 271 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu01g01461 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu01g01461 271 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu01g01461 271 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu01g01461 271 MobiDBLite consensus disorder prediction 139 192 - -
Tsu01g01461 271 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu01g01461 271 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 264 - -
Tsu01g01461 271 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 264 - -
Tsu01g01461 271 MobiDBLite consensus disorder prediction 114 192 - -
Tsu01g01461 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu01g01461 271 Gene3D - 13 66 - -
Tsu01g01461 271 SMART sant 66 114 IPR001005 -
Tsu01g01461 271 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01461 Tsu-Chr1 14039108 14040973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01461 1 271 MYB Transcription Factor Family AT2G31180 50.000 1.35e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g01461 Myb_DNA-binding 8.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01461 K09422 - gmx:100806975 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03672 07 42953706 42955182 Tsu01g01461 01 14039108 14040973 PCT