Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01458 ATGACAGTAAAAAATTTGTATCGATATCACCATTCGGATGAGAATTCTTCATCTGGGTCATTCTCAAATTCTGAATCTATAGCACCCACTATTCGGTTGCTTTTTCATCTTGAAAATGGAATGGCGGATCCTGATACTTATGGGAATCCTGAACGTGATATTGAACAAGCATTCATTACTTTGAAAAGAGGAACTCAGTTAGTTAAGTATTGTCGAAAAGGGAAGCCAAAACTTTGTAATTTCAGGCTTTCAcagGATGAAAAATCACTGATTTGGATTTCTCATGGAAAGGAAAAGCATCTGAAATTGGCTTCTGTTTCACGCATCATCTCAGGACAGAGAACAGCTGTCTTTAGAAGATTTTTGCGCCCTGAAAAGGATTATCTATCATTTtcacttatttataaaaaaggcGAAAGATCACTTGATCTGATCTGCAAGGATACAACTGAGGTTGAGGTATGGCTTTCGGGCCTTAAGGAATTAATTTCTACTGGACAGCATGGAAAGCGGCGCTCTTCAAGTGAATTGACAGATGATAGCGTTGACTCTTCTCCGATTGGTGGAGCACTAGAGTTTACTTCAAGCCTTTCCCAGGGCAGGTTTTCTTTTGAATCAGCTTTTCGTGAACCCACATCGCTTAGAAGACGATCAGATGTGGGGTCCGATAATGCAAGTATGCCAGTAAGGACAAGTGTTGGAGATGGTTCCCGTGTTAGTGTGTCAAGTGTTGGCTATGCTAGTAGTGTAGCATCAGGGCCAGATGACATAGAGTCTCTAGGTGATGTTTTCATATGGGGAGAGGTTTGGGTCGACGGAAATTCCTCTGATGGATCAGGGACTCAAGTCCCTTCCAAGACAGATGTTCTTATTCCTAAGCTATTAGAGTCTAACGTTGTTCTCGATGTTCATCAGATAGAACCCGGTGTAAGTCACATTGCTCTAGTAACACGGCAAGGGGAGGTTTTTACCTGGGGAGAGGACTCTGGTGGGAGACTTGGACATGGAATCGATAAAGATTTTGGTAAACCACGTCTTGTTGAGTCCATAGCGGTTACTAATATGAGTTTTGTTGCATGTGGTGAATATCATACATGTGCTGTAGCTACATCTGGAGATCTATACACATGGGGTGACGGTACACATAATGCAGGAATTCTAGGTCATGGAACTGATGTTAGCCATTGTATACCGAAGAGAGTCGCTGGCTTTTTAGAAGGACTTCAGGTTGTATCTATAGCATGTGGCTCATGGCATACAGCATTGATAACCTCCAATGGGAAGCTTTTTACCTTTGGAGATGGAATGCTCGGTGTCTTGGGGCATGGAGATAGAGAGAGTGTTTCATATCCAAAGGAGGTAGAGTTATCAAGTGGACACAAGGCTATTAAGGTTGCATGTGGAGTGTGGCACACTGCAGCCATTATAGAGGTTAATGATGAATCAGATTCAAATGCTTCTGCATCAAAGAGACTATTCACATGGGGTGATGGCGATCAATATCgtttgggtcatgttaacaagGAAACCTATCTTCAACCGACTTGTGTGGCTGCACTTGCTGAATATAATTTTCAACAGGTTGCATGTGGACAAAGTTTCACTGTTGCTCTAACCGCATCTGGACATGTTTTTACTGTGGGAAGCACAGAATATGGTCAACTAGGAAATCCAAACTCTGATGGAAAAGTACCGATTCTAGTAAGAGATAAATTACAAGGTGAATGTGTTGAAGAAATATCATGCGGCACACATCATGTTGCTGTGTTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCGAATGGAAGATTAGGACATGGAGACACAGATGATCAGAAAATTCCAACATTGGTGGAAACCTTGAAAGAAAGGCATGTAAAGAATATCGCATGCGGCGCAAATTTTACAACTTGTATATGCATACATAAATGGGTTTCTGGGAATGACCAGTCGGTTTGCTCCGGTTGTAGACAACCTTTTGGTTTTACTAGAAAAAGGCATAATTGTTATCATTGTGGATTGGTGCATTGTCATCCTTGTAGTTCTAAAAAGGCGTTGAAAGCAGCATTGGCTCCAACACCTAGCAAACCACATCGCGTGTGTGATGCTTGTTACCCAAAGCTTAAAGGTTGTGATAGTCTTAACGCTTCCAATTATAGTAGAGAAATTAGTCGTCCAGTTAGTACCACATATGGAAGATCTGACAAGGGAGAGGTAAAGCCTTCAAAATTTCTCTTGGCTTCTTCTGCCATAGGTCTAGTGAAATACCTTGACTTAAGGAGTAATATGCTTGGAAGTTCACAAGAACCTTCTTCCATGGGCAGAGAGGTTCAATCACCGTTGTTTTTGCAATTGAAAGATGTAGTATTTCCAGGTTCATCAAGTTCCGCACAGAATACTTCCAGGCCTCTTATTATGCCGCAAAGTCAACCAACAACTGCACCTTCATCAGCTATTTCAAGACCAACCTCACCATATTCAAGAAGACCGCCTAGCCCAACACGTTGTAGTTCCCCTGGATTTTCAAGAACCATTATTGATAacttaaagaagaaaaatgagcTTTTGAATCAAGAAGTCTCAAAGTTGCAAAACCATATTCAAAGTTTAAAGCAAAAGGGCGACATGCAAGATATGAAGATTAACGAGCTTCAGAAAAATATTGAGCAAGCAAATCTGTTGGCTGGAGAGGAATTTTCTAAGCATAGAGAAGTAAGGGATTTCATCAAGTCTATGGCAGATGAGTTGAGGGAAGTGACTGAAAATTTGCCACCAGAGATTCCTGGCAGTGAAACTTTGAAAGAGATTCATGCTCAAGCGCAATATATTCTGCAAGGAAATTTAGAATTTGAATCTTCGTTCCAATCGGGCTTTGAGTCTGAGAAACAAACTGGAAGAGCATCAGATAGCAACTCTTCAAAACCGCAAGAGCAAAGATCGGAAGGAAATGACGAAGCTTCTAAGGCTGTTCCATCTATAGATGGAGGAAATGTTCCTCACAAATGCAGAAGATCGTATGTATCGAGTACAGCAGTGTCTCCACCAAGTTCAGAAAATCGTTCCAGATCACCTGAATCTCTCAATCCTGTGAGTGAAGAAGAAATATCCATCATTGAACAATTTGAACATGGTGTCTATGTCACAGTCAGTTTACTACCTGGTGACGTAAAAGTTTTCAAACGTGTTCGATTCAGTAAGAGAAGATTCAGTGAGCAACAAGCAGAAGAATGGTGGAACAATAACAAAGATAGGTTGCAGAACAGATACACTATACCTAATGAAATGACTGAAGAAAATGGTGAACCATCACATTCTTAA 3327 0.4037 MTVKNLYRYHHSDENSSSGSFSNSESIAPTIRLLFHLENGMADPDTYGNPERDIEQAFITLKRGTQLVKYCRKGKPKLCNFRLSQDEKSLIWISHGKEKHLKLASVSRIISGQRTAVFRRFLRPEKDYLSFSLIYKKGERSLDLICKDTTEVEVWLSGLKELISTGQHGKRRSSSELTDDSVDSSPIGGALEFTSSLSQGRFSFESAFREPTSLRRRSDVGSDNASMPVRTSVGDGSRVSVSSVGYASSVASGPDDIESLGDVFIWGEVWVDGNSSDGSGTQVPSKTDVLIPKLLESNVVLDVHQIEPGVSHIALVTRQGEVFTWGEDSGGRLGHGIDKDFGKPRLVESIAVTNMSFVACGEYHTCAVATSGDLYTWGDGTHNAGILGHGTDVSHCIPKRVAGFLEGLQVVSIACGSWHTALITSNGKLFTFGDGMLGVLGHGDRESVSYPKEVELSSGHKAIKVACGVWHTAAIIEVNDESDSNASASKRLFTWGDGDQYRLGHVNKETYLQPTCVAALAEYNFQQVACGQSFTVALTASGHVFTVGSTEYGQLGNPNSDGKVPILVRDKLQGECVEEISCGTHHVAVLTSRSELYTWGRGANGRLGHGDTDDQKIPTLVETLKERHVKNIACGANFTTCICIHKWVSGNDQSVCSGCRQPFGFTRKRHNCYHCGLVHCHPCSSKKALKAALAPTPSKPHRVCDACYPKLKGCDSLNASNYSREISRPVSTTYGRSDKGEVKPSKFLLASSAIGLVKYLDLRSNMLGSSQEPSSMGREVQSPLFLQLKDVVFPGSSSSAQNTSRPLIMPQSQPTTAPSSAISRPTSPYSRRPPSPTRCSSPGFSRTIIDNLKKKNELLNQEVSKLQNHIQSLKQKGDMQDMKINELQKNIEQANLLAGEEFSKHREVRDFIKSMADELREVTENLPPEIPGSETLKEIHAQAQYILQGNLEFESSFQSGFESEKQTGRASDSNSSKPQEQRSEGNDEASKAVPSIDGGNVPHKCRRSYVSSTAVSPPSSENRSRSPESLNPVSEEEISIIEQFEHGVYVTVSLLPGDVKVFKRVRFSKRRFSEQQAEEWWNNNKDRLQNRYTIPNEMTEENGEPSHS 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01458 1108 MobiDBLite consensus disorder prediction 218 237 - -
Tsu01g01458 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 465 475 IPR000408 -
Tsu01g01458 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 542 593 IPR000408 -
Tsu01g01458 1108 Pfam Transcription factor regulating root and shoot growth via Pin3 1040 1092 IPR013591 -
Tsu01g01458 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 491 538 IPR000408 -
Tsu01g01458 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 320 368 IPR000408 -
Tsu01g01458 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 426 475 IPR000408 -
Tsu01g01458 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 541 590 IPR000408 -
Tsu01g01458 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 595 642 IPR000408 -
Tsu01g01458 1108 Pfam Regulator of chromosome condensation (RCC1) repeat 371 423 IPR000408 -
Tsu01g01458 1108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 660 716 IPR013083 -
Tsu01g01458 1108 Gene3D - 53 172 IPR011993 -
Tsu01g01458 1108 MobiDBLite consensus disorder prediction 214 237 - -
Tsu01g01458 1108 SUPERFAMILY RCC1/BLIP-II 261 647 IPR009091 -
Tsu01g01458 1108 SMART fyve_4 644 713 IPR000306 GO:0046872
Tsu01g01458 1108 MobiDBLite consensus disorder prediction 1006 1031 - -
Tsu01g01458 1108 CDD PH_PLC_plant-like 52 164 - -
Tsu01g01458 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 320 371 IPR000408 -
Tsu01g01458 1108 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 53 1094 - -
Tsu01g01458 1108 Pfam FYVE zinc finger 646 711 IPR000306 GO:0046872
Tsu01g01458 1108 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 413 423 IPR000408 -
Tsu01g01458 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 372 426 IPR000408 -
Tsu01g01458 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 427 478 IPR000408 -
Tsu01g01458 1108 MobiDBLite consensus disorder prediction 959 1031 - -
Tsu01g01458 1108 Gene3D - 484 659 IPR009091 -
Tsu01g01458 1108 SUPERFAMILY PH domain-like 54 163 - -
Tsu01g01458 1108 PRINTS Chromosome condensation regulator RCC1 signature 429 443 IPR000408 -
Tsu01g01458 1108 PRINTS Chromosome condensation regulator RCC1 signature 413 429 IPR000408 -
Tsu01g01458 1108 PRINTS Chromosome condensation regulator RCC1 signature 322 338 IPR000408 -
Tsu01g01458 1108 PRINTS Chromosome condensation regulator RCC1 signature 372 388 IPR000408 -
Tsu01g01458 1108 PRINTS Chromosome condensation regulator RCC1 signature 531 549 IPR000408 -
Tsu01g01458 1108 PRINTS Chromosome condensation regulator RCC1 signature 589 610 IPR000408 -
Tsu01g01458 1108 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 650 712 IPR017455 -
Tsu01g01458 1108 SUPERFAMILY FYVE/PHD zinc finger 646 718 IPR011011 -
Tsu01g01458 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 490 541 IPR000408 -
Tsu01g01458 1108 Gene3D - 383 483 IPR009091 -
Tsu01g01458 1108 Gene3D - 215 382 IPR009091 -
Tsu01g01458 1108 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 594 645 IPR000408 -
Tsu01g01458 1108 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 53 1094 - -
Tsu01g01458 1108 Coils Coil 849 890 - -
Tsu01g01458 1108 ProSiteProfiles BRX domain profile. 1038 1093 IPR013591 -
Tsu01g01458 1108 MobiDBLite consensus disorder prediction 959 980 - -
Tsu01g01458 1108 MobiDBLite consensus disorder prediction 796 845 - -
Tsu01g01458 1108 Pfam Pleckstrin homology domain 55 163 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01458 Tsu-Chr1 14015819 14022807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01458 1041 1094 Major Intrinsic Protein MIP AT1G31880 37.037 2.66e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01458 - - gmx:100778984 1395.95