LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01452	ATGGAAACTACAAGGCGTTGGTTTAGCAAGTTCAGGTCAAAAAGTAAGGAAGCTACAAGCAAGGCAAAAGAAGGGTCAAAACCCCCAATAAACGAAGATCCACCTTCAACCGTAACCAAACAGAAGGTTGAAGCTGCAAAGCATTACATAGAAAATCATTATAAGAAGCAAATGCAGAGCTTGCAGGAGAGGAAGGAGAGACGTAATATGCTAGAAAAGAAATTGGCTGATGCCGAAGTCTCCGAGGAAGAGCAGAACAATTTGCTTAAGTATTTGGAGAAAAAGGAGACAGAAATCATGCGCCTTCAGAGGCATAAGATGGGTGCTGATGACTTTGAGCCCCTCACTATGATCGGAAAAGGTGCATTTGGAGAGGTTAGAGTCTGCCGGGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGTAGAGGACAGGTTGAACATGTCAAGGCTGAGAGGAACCTTCTTGCAGAAGTTGATAGCAATTGCATTGTAAAACTTTATTGTTCCTTTCAAGATGACGAGAATTTATATCTCATAATGGAGTATCTACCTGGTGGAGATATGATGACATTGCTGATGCGGAAAGATATACTGACTGAAGATGAAGCTAGGTTCTATGTCGGGGAGACTGTTCTAGCCATAGAGTCCATTCATAAACATAATTATATTCATAGAGATATCAAGCCTGACAACTTGCTGCTGGATAAACATGGTCACATGAAATTATCAGATTTTGGATTATGTAAGCCGCTGGACTGCAGTAACCTTCAGGAAAAAGACTTATCTGTTGGTATGAACAGAAGTGGACTCCTTCAAAGTGATGGACGTCCTTCAGCTCCTAAGCGCTCACAACAGGAGCAACTGCAGCACTGGCAGAAAAATCGCAGAATGCTAGCCTATTCGACGGTCGGAACACCCGATTATATTGCTCCAGAAGTTCTGTTGAAGAAAGGATATGGCGTGGAATGTGACTGGTGGTCTCTAGGAGCCATAATGTATGAAATGCTTGTTGGGTATCCGCCATTTTATTCAGATGAACCGATGGCAACTTGTAGAAAGATAGTAAATTGGCGAACTACTTTGAAATTTCCAGAAGAAGCTAAACTTTCACCAGAGGCAAAGGATCTTATTTGCAGACTCCTATGTAATGTGGAGCAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCATGCATGGTTCGACGGTACTGAGTGGGACAAATTGTACCAAATGAAAGCTGCTTTTATGCCTGAGGTCAATGACGAATTAGATactcaaaattttgagaaatTTGAAGAGGCGGACAAGCAAACTGAACCTTCCTCAAAGGCAGGGCCATGGAGAAagATGCTTCCATCTAAAGATATTAACTTTGTTGGTTACACATACAAGAATTATGAAATTGTGGATGAAAACGTAATACCTGGAATTGCTGAATTGAGGAAGAAAACAAAACCTAAAAGGCCATCAATTAAGTCCTTATTTGCGGAAGATGAATCATCTAAGGCTTCTTCTAATCAACCTGTTAGAGGGAGCTTCTTAAATCTCTTACCTCCTCAGATGGAAGTTCCTGAGAAAAATGAATCACAATGA	1626	0.409	METTRRWFSKFRSKSKEATSKAKEGSKPPINEDPPSTVTKQKVEAAKHYIENHYKKQMQSLQERKERRNMLEKKLADAEVSEEEQNNLLKYLEKKETEIMRLQRHKMGADDFEPLTMIGKGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDENLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKHGHMKLSDFGLCKPLDCSNLQEKDLSVGMNRSGLLQSDGRPSAPKRSQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDEPMATCRKIVNWRTTLKFPEEAKLSPEAKDLICRLLCNVEQRLGTKGADEIKAHAWFDGTEWDKLYQMKAAFMPEVNDELDTQNFEKFEEADKQTEPSSKAGPWRKMLPSKDINFVGYTYKNYEIVDENVIPGIAELRKKTKPKRPSIKSLFAEDESSKASSNQPVRGSFLNLLPPQMEVPEKNESQ	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01452	541	ProSitePatterns	Protein kinases ATP-binding region signature.	118	141	IPR017441	GO:0005524
	Tsu01g01452	541	Coils	Coil	54	88	-	-
	Tsu01g01452	541	SMART	pkinase_C_6	412	476	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Tsu01g01452	541	MobiDBLite	consensus disorder prediction	1	40	-	-
	Tsu01g01452	541	ProSiteProfiles	Protein kinase domain profile.	112	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g01452	541	MobiDBLite	consensus disorder prediction	496	541	-	-
	Tsu01g01452	541	ProSiteProfiles	AGC-kinase C-terminal domain profile.	412	484	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Tsu01g01452	541	SMART	serkin_6	112	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g01452	541	CDD	STKc_NDR_like	110	475	-	-
	Tsu01g01452	541	PANTHER	SERINE/THREONINE-PROTEIN KINASE	33	512	-	-
	Tsu01g01452	541	MobiDBLite	consensus disorder prediction	1	28	-	-
	Tsu01g01452	541	Gene3D	Phosphorylase Kinase; domain 1	102	197	-	-
	Tsu01g01452	541	MobiDBLite	consensus disorder prediction	508	524	-	-
	Tsu01g01452	541	Gene3D	Transferase(Phosphotransferase) domain 1	198	428	-	-
	Tsu01g01452	541	Pfam	Protein kinase C terminal domain	430	474	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Tsu01g01452	541	SUPERFAMILY	Protein kinase-like (PK-like)	87	458	IPR011009	-
	Tsu01g01452	541	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	231	243	IPR008271	GO:0004672\|GO:0006468
	Tsu01g01452	541	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	33	512	-	-
	Tsu01g01452	541	Pfam	Protein kinase domain	114	411	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01452	Tsu-Chr1	13957722	13963052	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01452	1	535	AGC Kinase Gene Family	AT4G14350	81.215	0.0	893

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Tsu01g01452		Pkinase	1e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01452	K08790		-	gmx:100795087	992.26

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu07g03701	07	43190510	43197838	Tsu01g01452	01	13957722	13963052	PCT