Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01450 ATGTGTTCATTTCCATTTGAAGCCGGCATACCTCATATAAAGTGGTCTGGAGTTGAGGGAGACTACAATGTTATGGCTATTGACCTTCTTGGACCGAGTCTTGAAGACTTGTTTAACTATTGCAGTAGAAAATTCTCTCTGAAAACAGTGTTGATGCTTGCAGATCAACTATTAAACAGAGTAGAGTATATGCACTCTCGGGGCTTTCTGCATCGTGATATAAAGCCCGACAACTTTCTAATGGGTTTAGGTCGCAAGGCAAATCAGGTATATATTATTGACTATGGCCTTGCGAAAAAGTATCGTGATCTTCAAACACACAAGCATATACCATACAGGGAAAACAAGAATCTCACTGGAACCGCTCGATACGCAAGTGTTAACACTCACCTTGGAGTAGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGTTATGTACTAATGTACTTTTTGAGAGGAAGTCTTCCATGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAGAAATATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTGTGCAAGTCACATCCAACAGAATTCACATCATATTTCCACTATTGCCGATCATTGCGGTTTGAAGATAAACCCGATTATTCGTATCTTAAGAGACTCTTCCGTGACTTATTCATCAGAGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGACCACGGCCAAGTGTGAAACCAGTCATAAACCCAGGACCATCTGGAGAGCGATTAGAACGGCCTTCAGTTGGACAAGAGATTCGTGATAGATTATCAGGTGCAGTGGGGGCATTTTCAAGAAGGAATGGCTCTGGACATGGACTGCATAAGGATCTTGCCAAGCAGCACAGGTCTTTAGATAATATGCCATCTCCCAAAGATGTGCAACCTGATTCTGACAGGGCTCGCAGTTCTACTCGTAATGGCAGTGCTTCAAAAAGACCTATGATATCAAACAGCAGACCAAGCTCTTCTGGGGAACCTAGTGAAAGCCGGTCTAGTCGATTGGTCTCGAGCAGCAGTCGTCTATCGACTACTCAGAGGGTTCAACCAGGTTTTGAATCCAAATCATCCTTCACTCGTGCCACCGCAGGGACACGAGGTAGTCGCGATGATACACTCAGGAGCTTTGAGCTCCTGTCGATTGGTACTGGGAAAAAGAAATGA 1230 0.4293 MCSFPFEAGIPHIKWSGVEGDYNVMAIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLLNRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSHPTEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRPRPSVKPVINPGPSGERLERPSVGQEIRDRLSGAVGAFSRRNGSGHGLHKDLAKQHRSLDNMPSPKDVQPDSDRARSSTRNGSASKRPMISNSRPSSSGEPSESRSSRLVSSSSRLSTTQRVQPGFESKSSFTRATAGTRGSRDDTLRSFELLSIGTGKKK 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01450 409 MobiDBLite consensus disorder prediction 304 322 - -
Tsu01g01450 409 MobiDBLite consensus disorder prediction 304 395 - -
Tsu01g01450 409 ProSiteProfiles Protein kinase domain profile. 1 223 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01450 409 PANTHER CASEIN KINASE I-LIKE PROTEIN 7 394 - -
Tsu01g01450 409 SUPERFAMILY Protein kinase-like (PK-like) 9 235 IPR011009 -
Tsu01g01450 409 PANTHER CASEIN KINASE-RELATED 7 394 - -
Tsu01g01450 409 SMART serkin_6 6 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01450 409 MobiDBLite consensus disorder prediction 323 391 - -
Tsu01g01450 409 Pfam Protein kinase domain 36 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01450 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Tsu01g01450 409 MobiDBLite consensus disorder prediction 244 272 - -
Tsu01g01450 409 Gene3D Transferase(Phosphotransferase) domain 1 4 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01450 Tsu-Chr1 13941612 13949854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01450 45 226 MAP Kinase Kinase Kinase AT1G62400 28.261 2.52e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tsu01g01450 Pkinase 5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01450 K08960 - mnt:21404312 684.485