Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01431 ATGGGAATTAGAGATTTTCGTATCAAAGTCAAGGCATTTAGGGTGAAATTTGTATGCTTAGGAAATAGAAGCATAAGAAGAAATCATGGAGGTTCAAGCAAGCCTTCATGGATGATGCCAATATCACATGGTCATCATGTTGTGGAACATGATGTGATTAAAGGTGATTCTGATGATTCTGAATTTGATTCAGTTGTGATACAAAGAGAACAAATTGGTGAAACTGAATTATGGTTTTTTGGAATCTTTGATGCTTTGATTGGAGATTGTGTTACCAAATATTTGcaatctaattattttgataagAATCTCAAAGAGTCTCAATTGAGGAGAAAAGCCAAAGAAACACTGAAGAGAGCATACCTAGGTGCAAAAACAAAGGTCAGAGAGGCAAACAAAACAGAGGAAACATGCATAATAGGTTCAACATCTGTGATAATCATAAATGGAGAAAAACTTGTGCTAGCTAACATTGGAGATTACAGAACTGTTTTGTGTAAAGATGGTGTAGCTTATCAGACAAATGGAAGATACAATCAATCATCCAAAAAACGTTGGTATCGCAGACTTTTTTCAGGTAATGCAAGTGCAACAGGTACAAAGTATGCCAAAGCTTTGGAACTTGTGGTTGGAGGTTATTGGATTGACTCTAGCACTGAATTTGTGATCTTAGCAAGCAATGGCATATGGGAGGTGATGAGGAACCAAGAGGCGGTAAATCTTATCAGACACATAGACGATCCACAAGAAGCAGCTGAGTGTTTGGCTAAGGAAGCATTGGTTAGGAGGAGCAAAAGCAACATTTCATGTTTAATCATTCGATTTGATTGA 831 0.3646 MGIRDFRIKVKAFRVKFVCLGNRSIRRNHGGSSKPSWMMPISHGHHVVEHDVIKGDSDDSEFDSVVIQREQIGETELWFFGIFDALIGDCVTKYLQSNYFDKNLKESQLRRKAKETLKRAYLGAKTKVREANKTEETCIIGSTSVIIINGEKLVLANIGDYRTVLCKDGVAYQTNGRYNQSSKKRWYRRLFSGNASATGTKYAKALELVVGGYWIDSSTEFVILASNGIWEVMRNQEAVNLIRHIDDPQEAAECLAKEALVRRSKSNISCLIIRFD 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01431 276 ProSiteProfiles PPM-type phosphatase domain profile. 59 275 IPR001932 -
Tsu01g01431 276 Gene3D - 48 276 IPR036457 -
Tsu01g01431 276 SMART PP2C_4 46 273 IPR001932 -
Tsu01g01431 276 SUPERFAMILY PP2C-like 66 276 IPR036457 -
Tsu01g01431 276 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 44-RELATED 6 275 - -
Tsu01g01431 276 PANTHER ALPHABET, ISOFORM E-RELATED 6 275 - -
Tsu01g01431 276 Pfam Protein phosphatase 2C 75 172 IPR001932 -
Tsu01g01431 276 Pfam Protein phosphatase 2C 215 268 IPR001932 -
Tsu01g01431 276 CDD PP2Cc 63 275 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01431 Tsu-Chr1 13731602 13734698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01431 1 275 PP2C-type Phosphatase Gene Family AT3G23360 43.525 4.22e-69 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01431 K19704 - gmx:100794054 405.216