Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01428 aTGGCAGAAACAAaagaaggatcaagttctgagaTATCTCTGAAAGATCAAGGTAACGAATTTTTCAAGTCAGGAAAATATCTCAAAGCTGCTGCACTCTACACTCAAGCTATCAAAAAAGACCCTTCAAATCCCACACTTTATAGTAATCGTGCTGCAGCACTGCTGCAATTGGATAAGCTTAATAAAGCTCTCGATGATGCTGAAATGACTATTAAGTTAAAACCCCAATGGGAAAAGGGACATTTCCGGAAGGGATGCATATTGGAGGCCATGAAACGATATGATGATGCTTTAGCTTCCTTTCAGATTGCTTCGCAGTATAACCCACAAAGTCAAGAagtattaaaaaagataaagaagatAAACCAACTAGCGAAAGATAGCAAGCGAGCTCAAGAAGTGGAGAATATGAGATCGAATGTTGACATGGCCAAAcatttagatacattgaaaccTGAAATGTCTGAAAAGTATGGATCTGAAGAATCCTGGAAAGACATCTTATCATTCCTTATTGAGACCATGGAGACCGCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAGAGTTTACTTCCTTCCTGATAAGGAAAAGACGCAGACTGATAAGTATCCCCCAATTGTGAATATTGATAAGGCCTTTGAAACACCAGAAACACACGGCAGCTGCTTTTCATTTCTTAGGCAGTATGCTGAGGAGTCTTTCTCCAAAGCAGCTTGCTTAGTGACTGCCAAAAAGATCATTGCTTATCCACAGGTTTGGAAAGGCCAAGGATCAAGGAAATGGAAACATGCACAGAGTGATGGTTTCTTTGTTCAATTTGAGTCTCCTTCCGTGCGAAAATTGTGGTTTATTTCCAGTTCAAATGAAAAGGGACAGACACTATGCAGGGATCCAGAAGTTTTGGACATTGGTTCTCATGAAGTTGTTCCTCGCTTGTTCAAAGAAAAGACATCCAGTTCTTAA 975 0.3785 MAETKEGSSSEISLKDQGNEFFKSGKYLKAAALYTQAIKKDPSNPTLYSNRAAALLQLDKLNKALDDAEMTIKLKPQWEKGHFRKGCILEAMKRYDDALASFQIASQYNPQSQEVLKKIKKINQLAKDSKRAQEVENMRSNVDMAKHLDTLKPEMSEKYGSEESWKDILSFLIETMETAVKSWHETSSVDARVYFLPDKEKTQTDKYPPIVNIDKAFETPETHGSCFSFLRQYAEESFSKAACLVTAKKIIAYPQVWKGQGSRKWKHAQSDGFFVQFESPSVRKLWFISSSNEKGQTLCRDPEVLDIGSHEVVPRLFKEKTSSS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01428 324 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Tsu01g01428 324 Coils Coil 51 71 - -
Tsu01g01428 324 Pfam TPR repeat 18 58 - -
Tsu01g01428 324 SMART tpr_5 79 112 IPR019734 GO:0005515
Tsu01g01428 324 SMART tpr_5 11 44 IPR019734 GO:0005515
Tsu01g01428 324 SMART tpr_5 45 78 IPR019734 GO:0005515
Tsu01g01428 324 Gene3D Tetratricopeptide repeat domain 4 163 IPR011990 GO:0005515
Tsu01g01428 324 PANTHER TPR REPEAT CONTAINING PROTEIN 13 320 IPR045248 GO:0006457|GO:0030544|GO:0051879
Tsu01g01428 324 PANTHER STRESS-INDUCED-PHOSPHOPROTEIN 1 13 320 - -
Tsu01g01428 324 SUPERFAMILY TPR-like 14 122 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01428 14 105 U-box Gene Family AT3G07370 29.348 6.00e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01428 - - gmx:100790717 582.022