Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01427 ATGCATGTTTTGACAATGATGGGAAAAACAACCAAATGGCTTAGGAATCTTTTGAaagggaagaaagaaaaagaaaaagagaaggaaaattGTGAAAATGGAATAGAAAATCCAACTACTCCAATCTCAACACCACCAAAGGAGAAAAGAAGATGGAGTTTTAGAAGATCATCAGCTTCTAAGGAAGTTAATGTTGCAGAATCAAGTGTCATTTCTTCTGTGACAGAAAAAACTAGCAAAGATTCTCAGAATTATCAGAGGAAACATGTCATGGATGTTGCTGCTGCTGATGGTGTCATCTTCTTGAATTCTGCAGGTTCTAATGGAGGAATTAGAAGGAGTGTTGAAGAGGCTTCTGCTattaaaattcaatcttttttcaGATCCTATTTGGCAAGAAAGGCACTGTGTGCTCTTCGAGGAATAGTGAAGCTTCAGGCACTAGTAAGAGGTCACTTAGTGAGAAAACAAACAACTGAGACACTAAGATGCATGCAAGCTTTGGTCATAGCACAGGCAAGAGCTTGTGCTCAAAGGGCTAGAATGTTATCAGAAGAAAAGACTAATCAAAAACAATCAATATACAGAAAAACCACAGAGGCCAGTTTATTCATGCATATGTATAATGAAATGGAGAGAAACTTGGAAGAGAATATAAAGACAGTGGAGATGGATGTTTGTGAATCCAAAGGCAACTCGAGGGGTAGATACAACACTACAGATCATGAACATCATGAATTGTCTCAACATAGATTTTCTGCATATTACTCACCAAATAGTTCATactcaaagaaagaaaactacaAGGTATCACCTACGCCATCGGCACTAACAGATTCAAGTCCAAGAGCATGCAGTGCACATTTTGAGGACTGTTCCTTCAGTACAGCACAGAATAGTCCCTATTACTACTCAGCAGTATCAAGAGTAGATGAATCAAAGCTTCCTTTTGCTTTCCCTAAACAATCCTATCAAGAATCCATGTCCAGTGACTATCCATTATTTCCAAATTATATGGCTAATACAGAATCATCAAGAGCTAAAGTCAGATCACAGAGTGCACCGAAGCAAAGGCCTGACACGTATGAGAGGCAGCCGAGTCGGCGAAGAGCTTCGGTTGAAGGAAGAAATGTTCCAAGGCCAGTGAGGATGGTGAGGTCATCTTCACATGTTGGTGCAACTGCACAAAACTACCAATATCCATGGTCAATAAAGCTTGATAGATCATCAGTTTCACTCAATGAGAGTGAGGGCTGTGGCTCTACAAGTACAGTAATAACAAACTCTAACTATTGCAGATCTCTTGTTTCATATAATACTCATGGACCAAGGTACTGA 1338 0.3774 MHVLTMMGKTTKWLRNLLKGKKEKEKEKENCENGIENPTTPISTPPKEKRRWSFRRSSASKEVNVAESSVISSVTEKTSKDSQNYQRKHVMDVAAADGVIFLNSAGSNGGIRRSVEEASAIKIQSFFRSYLARKALCALRGIVKLQALVRGHLVRKQTTETLRCMQALVIAQARACAQRARMLSEEKTNQKQSIYRKTTEASLFMHMYNEMERNLEENIKTVEMDVCESKGNSRGRYNTTDHEHHELSQHRFSAYYSPNSSYSKKENYKVSPTPSALTDSSPRACSAHFEDCSFSTAQNSPYYYSAVSRVDESKLPFAFPKQSYQESMSSDYPLFPNYMANTESSRAKVRSQSAPKQRPDTYERQPSRRRASVEGRNVPRPVRMVRSSSHVGATAQNYQYPWSIKLDRSSVSLNESEGCGSTSTVITNSNYCRSLVSYNTHGPRY 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01427 445 MobiDBLite consensus disorder prediction 343 360 - -
Tsu01g01427 445 Pfam IQ calmodulin-binding motif 140 157 IPR000048 GO:0005515
Tsu01g01427 445 Pfam IQ calmodulin-binding motif 118 136 IPR000048 GO:0005515
Tsu01g01427 445 Pfam Protein of unknown function (DUF4005) 321 376 IPR025064 -
Tsu01g01427 445 MobiDBLite consensus disorder prediction 20 56 - -
Tsu01g01427 445 PANTHER IQ-DOMAIN 5-RELATED 7 421 - -
Tsu01g01427 445 MobiDBLite consensus disorder prediction 343 381 - -
Tsu01g01427 445 SMART iq_5 115 137 IPR000048 GO:0005515
Tsu01g01427 445 SMART iq_5 138 159 IPR000048 GO:0005515
Tsu01g01427 445 MobiDBLite consensus disorder prediction 361 376 - -
Tsu01g01427 445 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Tsu01g01427 445 Coils Coil 14 34 - -
Tsu01g01427 445 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 7 421 - -
Tsu01g01427 445 Gene3D - 115 169 - -
Tsu01g01427 445 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01427 Tsu-Chr1 13707107 13709629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01427 6 435 IQD Protein Family AT4G14750 45.898 7.47e-98 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01427 - - gmx:100817667 538.88