Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01414 ATGCCTTTAAGGCAAATGAAAGAGAGTTCAGAACAACATCTTGTGATAAAACCTAATATGCAAAACAGTATGAATCATCAAAATCAAGTTAAGAAAGTTACTAAAGCTGTTCAAAATGGTAAAAGTTCTTCACCATTGTTGTCACAAGAACAAACTTCACCACCACCTCAAGTTAagagtggtggtggtggtggaaggAGAAGAAGTAGAAATGGTAGAAAATCTGATCAAGTTGATGTTTTGATGAGACCAAGTTGTAGACCTTGTACTACTGTTgtgaaaaataatgaaaatggtCATGTTGAAAATGGAAGCATAAGCATAATCACTTCTAGTGATGTTGAGATGAGTTTTCCTACTTCAAGTAAGTCTTTGAGTTTTGCTCAAAGACCAGGTTATGGACAAGTTGGTACAAAATGCATTGTTAAAGCTAACCACTTCTTTGCAGAATTACCAGACAAAGACTTGAATCAGTATgatGTAACTATTACACCTGAAGTGTCGTCCAAAGCAGTTAACAGATCCATTATAGCAGAACTTGTGAGGTTGTATAAAGAATCTGACCTTGGCATGAGGCTTCCGGCATATGATGGACGAAAAAGTCTGTACACAGCGGGGGTTCTTCCCTTTTCCTGGAGAGAGTTTAAGATTAAGCTTATAGAGGAAGAGGATGGAATTAATGGCCCTAAAAGGGAAAGAGAATACAAAGTGGTGATCAAGTTTGTTGCAAGGGCTAACTTGCATCACTTGGGGCAGTTTCTAGCTGGAAAGCGCGCGGATGCTCCACAAGAGGCAATACAAATTCTTGACATTGTACTAAGAGAGCTAGCATCGAAGAGGTTTTGTCCCATCGGGAGGTCCTTTTATTCACCTGATATTCGAACACCACAACGGCTCGGAGAAGGATTGGAGTCGTGGTGTGGATTTTACCAAAGCATAAGGCCTACTCAGATGGGCCTTTCCCTTAATATCGATATGGCTTCTGCTGCGTTCATTGAACCTCTTCCGGTGGTGGAGTTTGTTGGCCAGCTATTGGGAAAAGATGTGCTGTCAAGGCAGTTATCTGATGCGGACCGCATCAAGATTAAGAAATCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGGAGTGTTAGACGAAAGTATCGTGTTTCCGGTATAACGTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGAGAATTCGACTATGAAATCGGTGGTTGAATACTTCCAAGAAATGTACGGTTTCACTATTAAACATACACACCTTCCTTGCCTTCAAGTTGGTGGAAATCAAAAGAAAGCAAACTATTTACCTATGGAGGCCTGCAAAATTGTCGAGGGGCAACGATATACTAAAAGGTTGAATGAGAAGCAAATTACTTCTCTCTTGAAAGTGACATGCCAGAGACCCCGTGATCGagaaaatgacattttacgGACAGTTCAGCACAATGCTTATGATCAAGATCCTTATGCAAAGGAATTTGGGATTAAAGTCAGCGAGAAGTTAGCTTCAGTGGAAGCACGAATTCTTCCCGCTCCTTGGCTTAAGTATCACGAAagtggaaaagaaaaaaattgtttacccCAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGATGGGCATGCATAAATTTTTCACGAGGCGTTCAGGATAGTGTTGCTCGTACTTTTTGTAACGAGCTTGCGCAAATGTGTCAAGTATCTGGCATGgAATTTCATCCGGAGCCTGTTATCCCGATCTACAATGCAAAACCTGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCGTCGAACAAAACCAAAGGAAAGGAATTGGAGCTTTTGTTAGTAATATTGCCGGACAACAATGGTTCTCTCTATGGCGATCTCAAGCGTATTTGCGAGACTGACCTTGGTTTAATTTCTCAATGTTGTCTGACAAAGCATGTCTTTAAGATCACTAAGCAGTACTTAGCCAATGTGTCTCTGAAGATCAATGTTAAGATGGGTGGAAGAAACACCGTTCTTGTTGACGCTGTAAGCTGCAGAATCCCGTTGGTTAGTGACATACCGACAATAATATTTGGAGCAGATGTTACCCACCCTGAAAATGGGGAAGACTCCAGCCCCTCAATAGCAGCTGTAGTAGCATCGCAAGATTGGCCTGAAGTTACAAAGTATGCAGGCTTAGTTTGTGCTCAACCTCAAAGACAAGAACTTATACAAGATTTGTACAAAACTTGGCACGACCCTGTTCGTGGTGTAGTTAGTGGTGGCATGATCCGAGATTTGTTGGTTTCGTTTAGAAGGGCCACAGGACAGAAGCCACAAAGGATTATATTTTACAGGGATGGTGTAAGTGAAGGACAGTTTTACCAAGTTCTACTATACGAGTTGGATGCAATTCGGAAGGCGTGTGCTTCTTTGGAGCCAAACTATCAACCACCAGTAACTTTCATAGTTGTACAAAAGCGACATCATACTCGGTTATTCGCAAACAACCACAGGGACAGAAACAGCACCGATAGGAGTGGAAATATCCTGCCTGGAACTGTTGTTGATACCAAAATCTGTCACCCAACGGAGTTTGATTTTTATCTCTGCAGTCACGCTGGCATCCAGGGTACAAGTCGTCCAGCGCATTATCATGTTCTATGGGATGAAAATAACTTCACAGCAGACGGGATTCAGTCTTTGACAAACAATCTCTGTTATACATATGCCAGGTGTACACGCTCCGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCTTTTCGAGCCCGCTTCTACACAGAGCCAGACCTACAAGAGACTGGCTCCACTGGCGGTCGTGGTTCGAAAACAACACGTGCAGCCGGTGATTGCGGTGTCAAACCATTGCCAGCCTTGAAGGAAAATGTGAAGAGAGTTATGTTTTATTGTTAG 2964 0.4103 MPLRQMKESSEQHLVIKPNMQNSMNHQNQVKKVTKAVQNGKSSSPLLSQEQTSPPPQVKSGGGGGRRRSRNGRKSDQVDVLMRPSCRPCTTVVKNNENGHVENGSISIITSSDVEMSFPTSSKSLSFAQRPGYGQVGTKCIVKANHFFAELPDKDLNQYDVTITPEVSSKAVNRSIIAELVRLYKESDLGMRLPAYDGRKSLYTAGVLPFSWREFKIKLIEEEDGINGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEAIQILDIVLRELASKRFCPIGRSFYSPDIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKSLRGVKVEVTHRGSVRRKYRVSGITSQPTRELVFPVDENSTMKSVVEYFQEMYGFTIKHTHLPCLQVGGNQKKANYLPMEACKIVEGQRYTKRLNEKQITSLLKVTCQRPRDRENDILRTVQHNAYDQDPYAKEFGIKVSEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRGVQDSVARTFCNELAQMCQVSGMEFHPEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLVILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLVDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQPQRQELIQDLYKTWHDPVRGVVSGGMIRDLLVSFRRATGQKPQRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRNSTDRSGNILPGTVVDTKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYTEPDLQETGSTGGRGSKTTRAAGDCGVKPLPALKENVKRVMFYC 987
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01414 987 PANTHER PROTEIN ARGONAUTE 10 63 986 - -
Tsu01g01414 987 Pfam Piwi domain 625 943 IPR003165 GO:0003676
Tsu01g01414 987 Pfam Argonaute linker 1 domain 283 332 IPR014811 -
Tsu01g01414 987 Pfam PAZ domain 358 466 IPR003100 GO:0005515
Tsu01g01414 987 MobiDBLite consensus disorder prediction 1 79 - -
Tsu01g01414 987 Gene3D paz domain 328 454 - -
Tsu01g01414 987 SMART DUF1785_2 282 334 IPR014811 -
Tsu01g01414 987 Pfam Argonaute linker 2 domain 476 522 IPR032472 -
Tsu01g01414 987 CDD Piwi_ago-like 494 944 IPR045246 -
Tsu01g01414 987 SMART PAZ_2_a_3 339 472 IPR003100 GO:0005515
Tsu01g01414 987 MobiDBLite consensus disorder prediction 12 58 - -
Tsu01g01414 987 Pfam N-terminal domain of argonaute 139 273 IPR032474 -
Tsu01g01414 987 SMART Piwi_a_2 624 945 IPR003165 GO:0003676
Tsu01g01414 987 Gene3D - 693 987 IPR036397 GO:0003676
Tsu01g01414 987 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 63 986 - -
Tsu01g01414 987 SUPERFAMILY PAZ domain 329 490 IPR036085 GO:0005515
Tsu01g01414 987 SUPERFAMILY Ribonuclease H-like 616 945 IPR012337 -
Tsu01g01414 987 Gene3D - 514 687 - -
Tsu01g01414 987 CDD PAZ_argonaute_like 334 449 - -
Tsu01g01414 987 ProSiteProfiles PAZ domain profile. 335 450 IPR003100 GO:0005515
Tsu01g01414 987 Pfam Mid domain of argonaute 533 610 IPR032473 -
Tsu01g01414 987 ProSiteProfiles Piwi domain profile. 624 945 IPR003165 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu01g01414 Tsu-Chr1 13537101 13544777 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01414 1 987 Eukaryotic Initiation Factors Gene Family AT5G43810 80.758 0.0 1656
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01414 K11593 - gmx:100816999 1770.36