LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01412	ATGGATTTACTTCATCAAGTCAAAATCACACTAAAACCATTTCAAACAACTCTATTATTAATTCTCCCACTCACTTTGGTTCTACTACTAAATTTAGCATCCAAAACACGAAAAAAAGCACCATATCCACCGGGACCAAAAGGTTTACCCTTAATAGGTAACATGAACATGATGGACAAACTCACACATAGAGGTCTAGCAAATTTAGCAAAACTATACGGCGGCGTTTTGCACCTCCGCATGGGATTCATCCACATGGTAGCAATTTCAAATGCGGAAGCTGCACGTGAAGTGTTACAATTACATGACAACATATTCTCCAATCGCCCGGCAACAATAGCCATAAGTTACCTTACTTATAATCGTGCTGACGTGGTGTTCGCTCACTATGGTCCCTTTTGGCGCCAGATGCGGAAACTTTGTGTCATGAAACTCTTTAGTCGCAAACATGTGGAGTCCTGGCAATCCGTTAGAGATGAAGTTGATGCGGTTATCACCAACATTAATGACAATGTGGGAAAGCCAGTTAACATTGGCGatttggtttttaatttaacCAAAAATATTATCTACCGTGCAGCTTTTGGGTCGAGTTCAAACGAAGGACAAGATGAGTTTATTTTGATACTTCAAGAGTTTTCGAAATTGTTTGTAGCTTTTAATATTGCGGATTATGTTCCTTTTTTAAGAGTGGTTGATCCCCAAGGTTTCAATGCTAGGCTTGTTAAGGCTAGAGGTGCTTTGGATCATTTTATTGATAAGATTATTGATGAACACGTGGAGAAAAAGAGGAATATGAGTATTGATTGTGGTGATGAAGATAGTGATATGGTTGATGAATTATTGGCTTTTAACAATGATGAAGCTAAAGTGAGTAATGAATCGGATGATCTTCAGAATTCCATCAAACTCACTAGGGACAACATCAAAGCCATCATCATGGACGTGATGTTTGGAGGAACAGAATCGGTAGCAGCAGCAATAGAATGGGCTTTATCGGAGCTAATGAGAAATCCACAAGATCTAAAGCGAGTGCAAGAAGAACTCGCAACCGTGGTTGGCTTAGACCGGCGGGTGGAGGAATCAGACATAGAGAAACTCACTTATCTAAAATGTGTCGTCAAAGAGACATTGCGTCTTCACCCGCCGGTTCCCCTTCTCCTCCATGAAACGGCGGAAGTTGCGACAATTCGTGGTTATTTTGTTCCCAAGGGCTCGCGTGTGATGATAAACGTGTGGGCTATAGGTAGAGACAAAGACTCGTGGAAAGATCCAGAAGAATTTAAGCCTTCGCGGTTTCTTAATTCAAGTGCGCCCAATTTTAAAGGAAGTAATTTTGAGTTTATTCCATTCGGGTCGGGTCGAAGATCTTGTCCCGGAATGCAATTGGGCATGTATGCATTAGACTTGGCTTTGGCCCATTTACTTCATTGCTTTACGTGGGAGTTACCTGATGGGATGAAGCCAAATGAAATGGATATGAATGATGTTTTTGGACTCAGTGCTCCTAAAGCGAGTCGACTCATTGTTGTTCCAGCTAAGCGTGTTGTGTGCCCTCTCTGA	1563	0.4127	MDLLHQVKITLKPFQTTLLLILPLTLVLLLNLASKTRKKAPYPPGPKGLPLIGNMNMMDKLTHRGLANLAKLYGGVLHLRMGFIHMVAISNAEAAREVLQLHDNIFSNRPATIAISYLTYNRADVVFAHYGPFWRQMRKLCVMKLFSRKHVESWQSVRDEVDAVITNINDNVGKPVNIGDLVFNLTKNIIYRAAFGSSSNEGQDEFILILQEFSKLFVAFNIADYVPFLRVVDPQGFNARLVKARGALDHFIDKIIDEHVEKKRNMSIDCGDEDSDMVDELLAFNNDEAKVSNESDDLQNSIKLTRDNIKAIIMDVMFGGTESVAAAIEWALSELMRNPQDLKRVQEELATVVGLDRRVEESDIEKLTYLKCVVKETLRLHPPVPLLLHETAEVATIRGYFVPKGSRVMINVWAIGRDKDSWKDPEEFKPSRFLNSSAPNFKGSNFEFIPFGSGRRSCPGMQLGMYALDLALAHLLHCFTWELPDGMKPNEMDMNDVFGLSAPKASRLIVVPAKRVVCPL	520

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01412	520	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	451	460	IPR017972	GO:0005506\|GO:0016705
	Tsu01g01412	520	Pfam	Cytochrome P450	43	504	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g01412	520	PANTHER	CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE	7	520	-	-
	Tsu01g01412	520	PRINTS	E-class P450 group I signature	308	325	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g01412	520	PRINTS	E-class P450 group I signature	94	115	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g01412	520	PRINTS	E-class P450 group I signature	411	435	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g01412	520	PRINTS	E-class P450 group I signature	448	458	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g01412	520	PRINTS	E-class P450 group I signature	70	89	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g01412	520	PRINTS	E-class P450 group I signature	328	354	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu01g01412	520	PRINTS	E-class P450 group I signature	185	203	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01412	Tsu-Chr1	13510047	13512214	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01412	50	520	Monolignol Biosynthesis Gene Families	AT4G36220	72.516	0.0	732

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01412	K09755		-	gmx:100807448	791.571

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