Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01399 ATGAAAATTCTACAACTCATGAACATACCTGACTTGACAAGAGACAATGTAGCTAGTCATTTGCAGAAATATCGATCATTTTTGGAAAATGCTGCTGAGAAAGAAATTATGGGAGACACGTCGTATAGAGTTCTAAAGTCAACGTTTGCGTCGAATCTTCCAATCTCAGTGATCAAAGAGATTAATGAAATTAGAACAAACAAACTCCTTGCCTCTACATTATATCAAATAGGAGCTAAATTTTCTTATAGACAAGGATTGATGGccccttcttcttcctcttctccaAATTTTTTAACAGGGGATTTTAATTTTGGTGAAACTAGTTACCATAATTATGGTTCAATtggaaattattattttaatcatattaATCATGGTGTTAAAAATTGGAACTTGGAAGCTTTGAACAACTCTAGCACTTTGGCAAAGAATGTTACTTGGGATGCAAGAAATAATAATCCTTTTGGAATACAAATCAATAACAGATCTGAAATGGGTGGAACTGGAACTGTGAATCAAAGATGGTTTGAAAGTATTGGTATAAGGGATGATAATGCAAATAGCAATAACTTTGGGCTAAATGTTGGGGGTCAAAATGCAAATGTGAATTTTGGATCTTTAGGGTATGAAAACTTTGGTTTGGTTCAAGAAGGTTTTGGTTCTCTTTCTTATGTTGGGAGTGGGAGTGGGATTGGAAGTGAATTTCAAGAAGAATTGTTTAAAGAAGGAAATATTTATGAGAACAGAGAAATTCCTCTACAGAACTATAATGGCGGTACTTCCACCAATGTGGCCGAGTTCAACCAAATGGGGTTTAACAATTCTAACTTCTCGTTGGCTTATGACATGGATCTTCTTAATAAGATGAATGAGAACAATGATGCAAGTGCATTTTTGCAATCTGATCTTATTAATTCAATTCAAGATGTGCAACCCCTTGATCAGTTATATAATGGTGGTGGCGATACATCTCTAATTGGAAACACATCATGTGTGCTGAATGAGTACTCACCCATAAGTGTAAATCAAAACTCCATGCAGTTATATTTAGGTGGTGATGTAATCTCTTCTCCCGCTGAAATCAATTCATGTATGTTGAATGAGTCACCAATGAGCTTAGACCAAAATTTTAATCAGTTGCAAGGAAATGAACAATTTTCAAATGGAgatctatatgatatttttatggtGGACAAAATGTCTGAAGCAAGTACCTCAGCTACAACTAATCCGAAAATGGATATGGATCTTTTTGAAGCCGTGTTTGGTACCGTAGACAACTAG 1287 0.3349 MKILQLMNIPDLTRDNVASHLQKYRSFLENAAEKEIMGDTSYRVLKSTFASNLPISVIKEINEIRTNKLLASTLYQIGAKFSYRQGLMAPSSSSSPNFLTGDFNFGETSYHNYGSIGNYYFNHINHGVKNWNLEALNNSSTLAKNVTWDARNNNPFGIQINNRSEMGGTGTVNQRWFESIGIRDDNANSNNFGLNVGGQNANVNFGSLGYENFGLVQEGFGSLSYVGSGSGIGSEFQEELFKEGNIYENREIPLQNYNGGTSTNVAEFNQMGFNNSNFSLAYDMDLLNKMNENNDASAFLQSDLINSIQDVQPLDQLYNGGGDTSLIGNTSCVLNEYSPISVNQNSMQLYLGGDVISSPAEINSCMLNESPMSLDQNFNQLQGNEQFSNGDLYDIFMVDKMSEASTSATTNPKMDMDLFEAVFGTVDN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01399 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 2 26 IPR006447 GO:0003677
Tsu01g01399 428 Gene3D - 1 30 - -
Tsu01g01399 428 SUPERFAMILY Homeodomain-like 2 30 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01399 Tsu-Chr1 13350896 13353806 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01399 2 49 Response Regulator Gene Family AT5G07210 54.167 8.20e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu01g01399 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01399 - K14491 mtr:MTR_7g026400 146.362