Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01397 ATGGTTGGAATGGAACTCATACCGATAGGTACAATTTTAGTTGTTCTAACCAGTCAGGTTGTGAAAACAGCGAATGCAGCAATTGATGTTCTTGTCGACAAAGAAAGTTTTAATGTCCTTTCAAAACACCTTCTTGATATTGCACCAGTCCTAAAGGAATTACAGCTTCAAGAATTGAATGAGTCACAAGCTGCAAGGGTTGCTCTGGAGTCTCTTGAATCAGATGTAAAAAAAGCAAGTAATTTGGTCGAGAAGTATAGAAACCGCGGCCGTTTTTACTTACTTATGATGTGTCGACACATAGTCAAGGAGGTTGAACAAGTCATTAGGGATATTGGAAGTTCTCTGGCTGCACTGTCACTCGCAAATACCGAAGTCCTATCTAGAATTTCTGATCAAGTCAACAGATTACAGATCGAGATGCAAAGGGCGGAGTTTGAAGCTTCACAGTCTCAGCTTGACATTGTTGATAAGTTGAACCATGGAATTAAGGAGCAAAAATTAGATCAAGCTTTTGCAAACCATATGCTTGAGGAAATAGCAAGGGCAGTTGGGGTGCCAGTGGAGCCTTTAGAGATCAACAAAGAGATAGCCAGCATTAGATGGGAAAAAGAAGAAGCTTCTAACAGGAAAGAAAGAGCAGAAGTTATTTTCTTGGAGCAGATCATTTTGCTACTTTCTCAAGCTGACGCTGCAAGGGATTATGAAGAAGTTAAGAAACAATACTTTAAAAGGGTTCAGGTAATAGAGCGATATGGATCGAGGGAAAAATATATTCCACCGCTTAATTCTTTCCTTTGTTCGATAACCGGAGAAGTTATGGTAGATCCTGTGAGTCTTTGCACTGGTACTACATGTGAGAGATCTGCTGTCGAAGTTTGGTTTGAGGATGGAAACATGGCTGACCCTAAAACAGAAGAGGTTCTTGAAGATACTACCTTAAGATCGAATGTTCGATTAAGAGAATCCATAGTAGAGTGGAGAGAACTTAATTACTGTTTTAGAATAAAGTCTATCAAGGAAAACTTATTATCGAATTCTGACTTATTGTTGAAAGAGTCCTTGAGCCAGATGCAGGCTCTCATAAGAGAGAACTCAATTAACAAGGATTGGATTTCAATAGGAGAGCTTACTGATACTATTATCTCTATCCTTGGGAACTCTGATTCCTCAGATGTCAAGATGAAGATCTTGATTACTTTGAAGGATGCTGTAGAGGGGCACGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGGTGGGGTTACATTATTTCCTGCTTACAGAATGGCTCTAGAATTTCAAAGGAAGCAATTGATTTGCTATATGAGTTACTTCAAGACCGTTCTGGCTGGAATAGAAGTTTCTGCAAAAGGCTTTCTGAGCATCCGAGCGCAATTCTTTACCTTGTTACCATTCTAAAGGAACCTGTCAGTGATTCAACTGGGATTGCAGAAAAGATTTTGATGGAGCTTTTTGAAATAGATGAGGACAATGTTTCTTGTGCAGCTAAGTTTGGCTGGTACAAAGATCTTATTGATCGCATTATTCAAGGATCGGAGTCTTCAAGAATCTCAATGGTTAAAGCCATGATTAATTTGGAATCGGAAGAATCAAACTTGAAATTCCTTGGTGAGCAAGGAGTTATACCTCCTTTGCTAGAAATGCTATCTGGAAGCATTGAATTGAAAGAATTGTCATTATCAGCCTTGGTCAAACTAGCAGGAGTTCATGCCAACAAGGGAATTATTGCCACATATGGTGGTGTCCCTCTTGTTCTAGAGTTAATGTTCTCTCGCAGGACACGAGCGTTCATTACAATTAAATGCTTTGAAATCCTTGAGAAGCTTTCATCTGATGATGATGGAATTGATTTCTTTATTGATGGAGAAGGGAAACAACTCGAGTTAGATAACATTATCACCGATTTGCTAGCTCTACAGCAGCTTCCTAACTCAGTTCACTATTTCCGTAAGCCTGCATTGCGCGCTCTTCTTGGCATTTGTAAGTTTGAAACAGGTTTAGTTAAGAAGGCGGTTTTGGCAGCGAATGGTGTATCGCAAATTCTTCCCCTTCTTGATGACCCTAACTCGGAAATCAGGGAAACTGCCATAtgtcttctctttcttttctcacAACATGAACCAGAAGGAGTTGTTGAATACCTCTTCAGGCCGAGAAGACTCGAAGCTTTAGTTGGGTTTCTTGAGAATGATGAAAATAAGGATGTACAAGTGGCTGCTGCTGGTTTACTTGCCAACCTTCCTAAATCCGAACGAAAACTCACTATGCAATTAATCAATTTGGGTGGCCTTGATGCAATCATCaacattttgaaaaatggtaCAATGGACGCAAAAGAAAACGCTCTCAGTGCACTCTTTAGGTTCACAGATCCAACAGATATTGAGTCACAGCGTGATTTGGTCAAACGGGGAATATATCCTTTGCTAGTAAATTTTCTCAATACTGGTTCAGTGACAGCAAAGGCGAGAGCAGCAGCATTCATCGGTGATCTTTCCATGAGCACTCCAAAGCTCACAGTTGCCTCAAAATCAACCTTTCCCTGGTGTTTTAGATCATCTCAAGCTTCTTTATGTTCGGCACATGGAAGCATTTGCAATGTGAATTCCACATTTTGTCTGTTGGAAGCAAATGCTTTGCCTGGTTTGATAAGGCTTTTACAGGAGGAAGTTCATGCAACTGCTTATGAGGCTATACAAACACTTTCCACATTGGTTTTAGAAGACTTTCCTCAGAGAGGAGCTCGTGTCTTGCACGAGTCGAATGCAATGAGACCattattgaaaattttgaactGGGGAAGTGATTCTCTCAAGGCAGAAGCTCTAGGACTCTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGATTACTATGGATCAACGGCTAGATTACGTCTATTTGGTCTTACCGGCATGAATGTATATGGTGATGGCCACTTAAGGAGAAAGGCTGCAAGGGTACTGTCATTGCTTGAACGCTATTCGAGGTCAAGGTCGTCGTCATCTTCAATCACCGCAGTTAGTGAAATCTACGCTTATAAGTAA 3072 0.3994 MVGMELIPIGTILVVLTSQVVKTANAAIDVLVDKESFNVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKKASNLVEKYRNRGRFYLLMMCRHIVKEVEQVIRDIGSSLAALSLANTEVLSRISDQVNRLQIEMQRAEFEASQSQLDIVDKLNHGIKEQKLDQAFANHMLEEIARAVGVPVEPLEINKEIASIRWEKEEASNRKERAEVIFLEQIILLLSQADAARDYEEVKKQYFKRVQVIERYGSREKYIPPLNSFLCSITGEVMVDPVSLCTGTTCERSAVEVWFEDGNMADPKTEEVLEDTTLRSNVRLRESIVEWRELNYCFRIKSIKENLLSNSDLLLKESLSQMQALIRENSINKDWISIGELTDTIISILGNSDSSDVKMKILITLKDAVEGHARNKEKVVESQGWGYIISCLQNGSRISKEAIDLLYELLQDRSGWNRSFCKRLSEHPSAILYLVTILKEPVSDSTGIAEKILMELFEIDEDNVSCAAKFGWYKDLIDRIIQGSESSRISMVKAMINLESEESNLKFLGEQGVIPPLLEMLSGSIELKELSLSALVKLAGVHANKGIIATYGGVPLVLELMFSRRTRAFITIKCFEILEKLSSDDDGIDFFIDGEGKQLELDNIITDLLALQQLPNSVHYFRKPALRALLGICKFETGLVKKAVLAANGVSQILPLLDDPNSEIRETAICLLFLFSQHEPEGVVEYLFRPRRLEALVGFLENDENKDVQVAAAGLLANLPKSERKLTMQLINLGGLDAIINILKNGTMDAKENALSALFRFTDPTDIESQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIGDLSMSTPKLTVASKSTFPWCFRSSQASLCSAHGSICNVNSTFCLLEANALPGLIRLLQEEVHATAYEAIQTLSTLVLEDFPQRGARVLHESNAMRPLLKILNWGSDSLKAEALGLLEKVFVSKEMVDYYGSTARLRLFGLTGMNVYGDGHLRRKAARVLSLLERYSRSRSSSSSITAVSEIYAYK 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01397 1023 Coils Coil 69 89 - -
Tsu01g01397 1023 SUPERFAMILY ARM repeat 336 722 IPR016024 -
Tsu01g01397 1023 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Tsu01g01397 1023 Gene3D - 650 857 IPR011989 -
Tsu01g01397 1023 Gene3D - 858 1007 IPR011989 -
Tsu01g01397 1023 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Tsu01g01397 1023 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 727 755 IPR000225 GO:0005515
Tsu01g01397 1023 SUPERFAMILY ARM repeat 647 1003 IPR016024 -
Tsu01g01397 1023 SUPERFAMILY RING/U-box 248 331 - -
Tsu01g01397 1023 Coils Coil 127 154 - -
Tsu01g01397 1023 SMART arm_5 919 959 IPR000225 GO:0005515
Tsu01g01397 1023 SMART arm_5 715 757 IPR000225 GO:0005515
Tsu01g01397 1023 SMART arm_5 408 447 IPR000225 GO:0005515
Tsu01g01397 1023 SMART arm_5 875 915 IPR000225 GO:0005515
Tsu01g01397 1023 SMART arm_5 673 713 IPR000225 GO:0005515
Tsu01g01397 1023 SMART arm_5 536 576 IPR000225 GO:0005515
Tsu01g01397 1023 SMART arm_5 758 799 IPR000225 GO:0005515
Tsu01g01397 1023 SMART arm_5 802 842 IPR000225 GO:0005515
Tsu01g01397 1023 Gene3D - 9 123 IPR036537 GO:0007166
Tsu01g01397 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 334 IPR013083 -
Tsu01g01397 1023 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Tsu01g01397 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Tsu01g01397 1023 Gene3D - 335 649 IPR011989 -
Tsu01g01397 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01397 Tsu-Chr1 13329684 13334492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01397 260 959 U-box Gene Family AT1G68940 24.902 1.58e-35 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01397 - - gmx:100816935 1602.42