Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01395 atggAACGGCGGCAACAATCGCCACCGTCTCCACCACCATCACCGCCGTCACGAATCATCCTTGGTAAATACCAACTAACAAAGTTTCTCGGACGCGGAAACTTCGCAAAAGTATACCAAGCACGTTCACTCATCGATGGTTCAACCGTCGCCGTAAAAGTCATCGACAAATCAAAAACTGTCGATGCATCAATGGAGCCACGAATTGTTCGAGAAATCGACGCAATGCGTCGgcttcaaaatcatcaaaatattcTCAAGATCCATGAAGTTTTAGCTACTAAAACTAAGATCTACCTCATCGTTGATTTCGCCGGCGGCGGTGAACTTTTCAACAAACTTTCCCGACGAGGTAGGTTCCCGGAGTCATTAGCTCGTCGCTACTTTCAACAACTTGTTTCCGCTCTTTGTTTCTGCCACAAAAACGGCGTCGCTCACCGTGATCTTAAACCGCAGAATCTTCTCCTTGACGCCGACGGTAATCTTAAGGTTTCCGATTTCGGTCTCTCAGCGTTACCGGAGCAGCTAAAGAACGGTCTACTTCATACAGCTTGTGGTACGCCGGCGTACACCGCACCGGAGATTCTCGGTCGGATCGGTTACGACGGATCTAAAGCTGATGCCTGGTCGTGCGGTGTAATTCTCTACGTTCTTCTCGCCGGTCATCTTCCATTCGATGATTCAAATATTCCGGCGATGTGTAAGAGAATTACTCGCCGGGATTATCAGTTTCCGGCGTGGATTTCGAAACCAGCACGTTACTTGATTTATCAATTACTTGACCCGAATCCGAAAACACGAATTAGGTTAGAAAACTTAATTGGAAACACGTGGTATAAGAAATCGTTAAGAGAAGAACCTGAAGAGAAAGTTTTTGAATCTGATTTATACAACAAATACTGTTGTGAAAGTAAGAAAGTTGAATTTGGGATGAATGCTTTCGATATAATATCGATGTCTTCGGGTTTAGATTTGAGTGGTTTGTTCGAAACGGCGTCATTAAGGAGTGAAAAGAGGTTTACTTCTAGTGAAGAAGTTGGTGTGGTGGAAGAGAAAGTGAAGGAAATTGGAGtgagattagggtttagagttGAGATTGGGAAAAATGGTACAATTGGGTTAGGGAAAGGGAAAGTTACTATGGTTGTTGAGGTTTTTAAGATTGTGGATGATTTGTTGTTAGTTGCTCTTAAATTGGAAAGTGGTGGATTGGAATTTGAAGATCTTCATTGGAATGATTGGAAAATTGGGCTTCAAGATGTTGTTCTTTCTTGGCATAATCATGAATCCAACTTGAAAATATGTAATGTTGATTCTTGA 1320 0.4152 MERRQQSPPSPPPSPPSRIILGKYQLTKFLGRGNFAKVYQARSLIDGSTVAVKVIDKSKTVDASMEPRIVREIDAMRRLQNHQNILKIHEVLATKTKIYLIVDFAGGGELFNKLSRRGRFPESLARRYFQQLVSALCFCHKNGVAHRDLKPQNLLLDADGNLKVSDFGLSALPEQLKNGLLHTACGTPAYTAPEILGRIGYDGSKADAWSCGVILYVLLAGHLPFDDSNIPAMCKRITRRDYQFPAWISKPARYLIYQLLDPNPKTRIRLENLIGNTWYKKSLREEPEEKVFESDLYNKYCCESKKVEFGMNAFDIISMSSGLDLSGLFETASLRSEKRFTSSEEVGVVEEKVKEIGVRLGFRVEIGKNGTIGLGKGKVTMVVEVFKIVDDLLLVALKLESGGLEFEDLHWNDWKIGLQDVVLSWHNHESNLKICNVDS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01395 439 CDD CIPK_C 312 419 - -
Tsu01g01395 439 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Tsu01g01395 439 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01395 439 PANTHER SERINE/THREONINE KINASE 16 428 - -
Tsu01g01395 439 Gene3D Kinase associated domain 1, KA1 309 423 - -
Tsu01g01395 439 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Tsu01g01395 439 SUPERFAMILY Protein kinase-like (PK-like) 20 289 IPR011009 -
Tsu01g01395 439 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01395 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Tsu01g01395 439 Pfam NAF domain 311 365 IPR004041 GO:0007165
Tsu01g01395 439 Gene3D Phosphorylase Kinase; domain 1 26 109 - -
Tsu01g01395 439 Gene3D Transferase(Phosphotransferase) domain 1 110 303 - -
Tsu01g01395 439 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 16 428 - -
Tsu01g01395 439 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01395 Tsu-Chr1 13286666 13288533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01395 5 427 Miscellaneous Gene Families AT3G23000 57.907 1.43e-171 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Tsu01g01395 Pkinase 8.1e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01395 K12761 - gmx:100305372 642.499